Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01609 ATGGGCGCCAGCAGCGACCCGACCCAAGACGGGTCAGACGAGCAGCAAAAGCGGTCTGAGATCTATACCTACGAGGCGCCGTGGCACATCTACGCCATGAACTGGAGTGTCCGCCGTGACAAGAAGTATCGCCTTGCCATCGCCTCCCTCCTCGAACAGTACTCTAACCGCGTCGAGATTGTTCAGCTCGACGATTCCAACGGTGAGATCCGCTCCGACCCGACCCTCTCCTTCGAACACCCCTACCCTCCAACCAAGGCCATCTTCATCCCCGACAAGGACTGCCAACGCCCCGACCTCCTCGCCACCTCCTCCGACTTCCTCCGCGTCTGGCGCATCGCCGACACGGACGCGGAATCCTCCCCTCGCGCAGTCGAACTGAAGTCCCTCCTTAATGGAAACAAAAACAGCGAGTACTGTGGGCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCGCGCCGCATAGGCACTTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAGAAGGAAACTGTCGACACACAGTTAATAGCGCATGACAAAGAGGTTTACGACATAGCGTGGGGCGGCGTTGGCGTGTTCGCTTCCGTCTCTGCTGATGGCTCCGTTAGGGTTTTTGATCTCCGCGACAAAGAGCACTCCACAATAATCTACGAGAGCTCTGAACCGGACACTCCTCTGGTTCGGCTGGGGTGGAACAAGCAGGACCCGAGGTACATGGCCACTATTATCATGGACAGCGCCAAGGTGGTGGTGCTGGATATTCGCTTCCCCACACTGCCTGTGGTGGAGCTGCAGCGGCACCAGGCCAGCGTCAACGCCATTGCATGGGCCCCGCATAGCTCCTGTCATATATGCACTGCAGGGGACGATTCTCAGGCGCTGATTTGGGATTTGTCATCCATGGGTCAACCTGTGGAGGGTGGGCTTGATCCAATTCTTGCGTACACTGCTGGGGCGGAGATTGAGCAGCTTCAGTGGTCGTCTTCGCAGCCTGATTGGGTCGCCATTGCGTTCTCTACTAAACTTCAGATTCTTAGGGTTTGA 1056 0.5777 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYSNRVEIVQLDDSNGEIRSDPTLSFEHPYPPTKAIFIPDKDCQRPDLLATSSDFLRVWRIADTDAESSPRAVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01609 351 FunFam WD repeat-containing protein LWD1 17 350 - -
Vian2g01609 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 304 - -
Vian2g01609 351 PANTHER WD REPEAT CONTAINING PROTEIN 12 351 IPR045159 -
Vian2g01609 351 Gene3D - 10 350 IPR015943 GO:0005515
Vian2g01609 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 304 IPR001680 GO:0005515
Vian2g01609 351 SMART WD40_4 124 169 IPR001680 GO:0005515
Vian2g01609 351 SMART WD40_4 172 210 IPR001680 GO:0005515
Vian2g01609 351 SMART WD40_4 71 112 IPR001680 GO:0005515
Vian2g01609 351 SMART WD40_4 261 301 IPR001680 GO:0005515
Vian2g01609 351 SUPERFAMILY WD40 repeat-like 40 309 IPR036322 GO:0005515
Vian2g01609 351 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Vian2g01609 351 Pfam WD domain, G-beta repeat 268 301 IPR001680 GO:0005515
Vian2g01609 351 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01609 Vian-Chr2 33405260 33406315 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01609 K11805 - gmx:100818850 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01609 2 33405260 33406315 Vian2g01609 2 33405260 33406315 ECH