Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01607 ATGGTTTCTTCTTTGTGGACCGTGTCTCTGATATTGGCATCGCTGGCCTCTGCAGCAGTTTGTGCCAACCCGAGGAGGCCAGTGGATGTACAATTCGGTAGAAACTACGTTCCTACATGGGCTTTTGATCACATCAAATACTTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGACAAGTACACTGGTACTGGCTTTCAGTCCAAAGGGTCATACTTGTTTGGCCATTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCCTTCTATTTATCTTCTCAAAACGCGGAGCACGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTCACCGGAGGAAAGGGTGACAGAGAGCAAAGAATCTATCTCTGGTTTGACCCCACCAAAGCATATCACAGATACTCTATTCTCTGGAACTTGTATCAGATTGTGTTCTTTGTTGACGATGTGCCGATCAGAGTGTTCAAGAACAGCAAGGACTTGAGAGTGAAGTTTCCATTCGACCAACCTATGAAGCTATACAACAGTTTGTGGAATGCTGATGACTGGGCAACAAGGGGTGGTTTGGAGAAAACAGATTGGTCGAAAGCTCCTTTCGTAGCAGCGTACAAGGGGTTCCACATCGATGGGTGCGAGGCCTCTGTGAACGCTAAGTTCTGCGACACACAGGGCAAGAGATGGTGGGACCAACCAGAGTTTCGTGACCTTGACGCCGCTCAATGGCAAAGACTCAAATGGGTGCGTCAGAAATTCACCATCTACAACTACTGCACTGACAGAAAACGCTACCCTCAACTTTCCCCTGAATGCAGTAGAGACCGCGACATTTAA 882 0.466 MVSSLWTVSLILASLASAAVCANPRRPVDVQFGRNYVPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSILWNLYQIVFFVDDVPIRVFKNSKDLRVKFPFDQPMKLYNSLWNADDWATRGGLEKTDWSKAPFVAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQRLKWVRQKFTIYNYCTDRKRYPQLSPECSRDRDI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01607 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Vian2g01607 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 220 IPR000757 GO:0004553|GO:0005975
Vian2g01607 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 30 287 IPR044791 GO:0004553
Vian2g01607 293 PIRSF EndGlu_transf 1 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian2g01607 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian2g01607 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Vian2g01607 293 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Vian2g01607 293 Gene3D - 17 293 - -
Vian2g01607 293 FunFam Xyloglucan endotransglucosylase/hydrolase 19 289 - -
Vian2g01607 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01607 Vian-Chr2 33381611 33383137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01607 7 293 Glycoside Hydrolase AT5G13870 79.443 1.73e-179 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01607 K08235 - gmx:547775 589.726