Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01600 ATGGCGCTATCCACCGACGCATCACCACCACCTTCCTTAGGAGAAGAACCGTTACCTCACGACGGCGACGGTTACGACCTTAACGATGATGATGGTGCTTCGTTCGGCGTCGTTTCACTGGACGACGAGAGTTTTCCGTCGCAACTCCCCGGATCGGAAACGCCGTCGGAAAAGAGCAGTTTCACCGCTGATTTCTATCGTTGCGGAACCGATTGGTCCTCGCTGATGTTGCAGGATGATAAAAATAATAGACACTCCGATTTCGAGGGCGATTCAGGCAAGAAGATGAAGCAGGCCAACCTGTTCCAGATTTGGGGTTTCAAAAGAAGCGACGTCGTTGGTTTAGTTGAATCTGGACCGAGTTTGAATGTTTATTCTGATAAAGGAGGTAGTTCTTCTGAAAGGAAGATTGTGAAACCTGGAAATTGGGGTTCGATTTCGCGCGACGGGGAAAAAGAGTCCGAGAACACGAAATCTCTCCGCAAGAGAAAGCGTTTCAGTGGTGAAAATAGGGTTACACGTTCCTGTCCCTTTTATAAGAAAATCCCAGGGACAACATTCACTGTTGATGCTTTTCGGTATGGGTCTCTTGAAGGGTGTTCAGCGTATTTTCTTAGTCATTTCCATTGCGATCACTATGGTGGCCTTAGCAAGAAATGGTCTCATGGCCCTATCTATTGCTCTCCTCTCACGGGACGGCTTGTTCAAATGTGTCTATCGGTAAATCCTTTGTATATCCACCCTTTGGAATTTAATACGGAACATGTGATTGATGGTGTCAAAGTGACTTTTTTAGAAGCTAATCATTGCCCTGGTGCGGCTTTGATTCACTTTAGCCTCCCAAATGACCAACGTTATTTGCACACTGGGGACTTTAGAGCGTGTAAACCAATGCAAGCTTACCGTCTTCTTGTAAATCAACGTGTAAATGTACTTTATTTGGATACTACATATTGCAATCCAAAGTACAGGTTCCCTTCCAAGGAAGATGTACTAAATTATGTTGTCAAAATTACAAAGAACCATCTCAAAATTCATCAGAGAACTTTAGTGGTCGTTGGGGCTTACAGTATTGGCAAAGAATGTGTATATCTTGCAATTTCTAAAGCTCTTGGGGTAAAAATTTATGCCAATGCTTCAAGAAGACGGATTTTACAAGCTTTTGATTGGTCCGACCTTTCAGATAGACTCTGTACAATAGGAAAGAACACGCTTCTCCATGTCCTGCCCATGTCATCTTTGAGACCTGAGACCTTAAAAGATTACTTGAAGACATACAAGGATCAATTCACAGAAGTTTTGGCGTTCCGTCCAACAGGTTGGACTTTCAATGAAAAGATAAGCAACGATCTGGAACTAATTAAACCTGTTACCAAAGGAAATATCACGATTTATGGAGTTCCCTACAGTGAGCATTCCAGCTATACAGAACTGCGAGATTTTGTTCAGTTTTTGAGACCTGACAAGATCATTCCAACTGTGAATGTTGGGAATGCTGCTAATCGAGAAAAGATGCAATCCTATTTCCGAGACTGGCTGAGGTGCTGA 1548 0.4328 MALSTDASPPPSLGEEPLPHDGDGYDLNDDDGASFGVVSLDDESFPSQLPGSETPSEKSSFTADFYRCGTDWSSLMLQDDKNNRHSDFEGDSGKKMKQANLFQIWGFKRSDVVGLVESGPSLNVYSDKGGSSSERKIVKPGNWGSISRDGEKESENTKSLRKRKRFSGENRVTRSCPFYKKIPGTTFTVDAFRYGSLEGCSAYFLSHFHCDHYGGLSKKWSHGPIYCSPLTGRLVQMCLSVNPLYIHPLEFNTEHVIDGVKVTFLEANHCPGAALIHFSLPNDQRYLHTGDFRACKPMQAYRLLVNQRVNVLYLDTTYCNPKYRFPSKEDVLNYVVKITKNHLKIHQRTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILQAFDWSDLSDRLCTIGKNTLLHVLPMSSLRPETLKDYLKTYKDQFTEVLAFRPTGWTFNEKISNDLELIKPVTKGNITIYGVPYSEHSSYTELRDFVQFLRPDKIIPTVNVGNAANREKMQSYFRDWLRC 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01600 515 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 172 506 - -
Vian2g01600 515 Pfam DNA repair metallo-beta-lactamase 395 498 IPR011084 -
Vian2g01600 515 FunFam DNA cross-link repair 1A 182 346 - -
Vian2g01600 515 MobiDBLite consensus disorder prediction 125 166 - -
Vian2g01600 515 MobiDBLite consensus disorder prediction 146 163 - -
Vian2g01600 515 Gene3D - 182 494 IPR036866 -
Vian2g01600 515 CDD SNM1A-1C-like_MBL-fold 170 321 - -
Vian2g01600 515 Gene3D - 324 472 - -
Vian2g01600 515 FunFam DNA cross-link repair 1A 324 472 - -
Vian2g01600 515 SMART Lactamase_B_5a 98 323 IPR001279 -
Vian2g01600 515 MobiDBLite consensus disorder prediction 45 60 - -
Vian2g01600 515 MobiDBLite consensus disorder prediction 1 60 - -
Vian2g01600 515 SUPERFAMILY Metallo-hydrolase/oxidoreductase 197 508 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01600 Vian-Chr2 33276187 33279602 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01600 K15340 - gmx:100790844 846.269