Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01597 ATGGCTTCTTCTTCTTCTCTCCTCTCAAGGCCTCACCTTCCCACACCTCTCATCTCCAAACTCAGCTCTTTTCCGAGAACATGGAGTCTCTTCATCATCTCACACCCCAAACACGGAAACAAGCAAAAGCTGTCACCTTTCCCCATCAATGCAGTGTACACCCCACATAGCCCCTACACCCCTTCCACACCCTCCAAAACTGAGCCCCGTAACGACCCCATCTCCGTCCTCAACGAGAGGATTCGCCGCGAGTACAGCAAGAAAGAGGTTTTCAGAACGGTGATGAACTCAGAGGAAGCGGGGAAGTACATGCGGATGGTGAAGGAGCAGCAGCAGAAGGGGTTGCAGAAGTTGAAGGGCGAGAGGGAGAAAAAAGATGGGGTCTTCAGCTACAGGGTCGACCCTTACACGCTCCGTTCTGGGGACTATGTTGTGCACAAGAAAGTGGGGATTGGGAGGTTTGTTGGGATACGGTTTGATTCTGCTAAGAATTCTTCACAAGCCTCTGAGTATGTTTTCATCGAATATGCTGATGGCATGGCAAAACTACCTGTCAACCAGGCTTCCAAAATGCTCTACAGATATAGTCTGCCAAATGAAACCAAGAAGCCAAGGACATTGAGCAAGTTGAATGATACTGGTGCGTGGGAGAGAAGAAAGGTTAAGGGTAAGGTTGCAATACAGAAGATGGTTGTGGACCTGATGGAACTATATCTACACAGGCTTAAGCAAAGAAGGCCCGCATATCTGAAGACTCCTGCCTTGGCTGAATTTGAAGCTCAGTTCCCTTATGAACCCACACCAGATCAGAAACAGGCATTTATTGATGTTGAGAGGGATTTGACGGGGCAAGAAACACCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCAATACGTGCTATCTTCTGTGTTGTCTCGGCTAAAAAACAAGCGATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATACCCTGATATCAAGGTTGGGCTACTAAGCAGGTTCCAGACGAAAGCTGAGAAAGAAGAGAATTTGGACATGATTAAGAATGGTAGCCTGGATATTATAGTTGGGACTCATTCACTCCTAGGAGATCGTGTTACATATAACAATCTTGGTCTACTTGTCGTTGATGAGGAGCAGAGGTTTGGTGTTAAACAAAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTATCTGCAACCCCCATACCACGAACTCTTTATTTAGCATTAACAGGGTTTCGTGATGCCAGTTTAATATCAACACCACCTCCAGAAAGAGTTCCTATCAAGACTCATCTTTCTTCATTCAGTAAGGAAAAAGTAATCTCAGCCATCAAGTATGAGCTGGATCGTGGTGGTCAAGTTTTTTATGTTCTGCCACGTATTAAAGGACTGGATGAAGTAATGACATTTCTTGCAGAGTCATTCCCAAATGTGGAAATAGCCATTGCCCATGGGAAGCTGTTCTCAAAGCAATTAGAAGATACAATGGAGAAGTTTGCTCTAGGCGAAATAAAAATCCTTATCTGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAATACGATTATCATTCAGGATGTTCAGCAATTTGGCCTTGCACAGTTATACCAGTTGCGTGGAAGGGTTGGGCGAGCAGATAAGGAAGCACATGCATATTTATTTTATCCTGACAAAGGCCTGCTTTCTGATCAAGCATTGGAGAGGCTTGCTGCTATTGAAGAATGTCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAACAACAATCAGGAGATGTTGGAAATGTTGGTGTTGATTTGTTTTTTGAGATGCTCTTTGAGAGCTTGTCCAAGGTTGAAGATCACTGTGTTGTTTCAGTTCCTTATCACTCGGTACAGGTTGACCTCAACATAAATCCTCATCTCCCTTCTGACTACATTAATTATCTGGAAAACCCTATGAAAATTATAAGTGATGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCGCTCCATGGAGATTTTACTAAAGAAACTTTACTTGAGGAGAATGGCGGCTGATTTAGGGATAACCAGAATTTACACTTTAGGGAAGATGATCTTTATGAAGACAAACATGAGCAAAAAGGTATTCAAGCTGATGATACAATCCATGGCATCAGATTTACATAAAAATTCATTGCTTCTTGAGGGGGACCAAATTAAGGCTGAACTTCTTTTAGAGTTACCAAAAGAACAACTTCTTAATTGGATCTTTCAATGCCTGGCTGAACTTCATGCTTCACTTCCTTCTTTCATAAAGTACTAG 2460 0.426 MASSSSLLSRPHLPTPLISKLSSFPRTWSLFIISHPKHGNKQKLSPFPINAVYTPHSPYTPSTPSKTEPRNDPISVLNERIRREYSKKEVFRTVMNSEEAGKYMRMVKEQQQKGLQKLKGEREKKDGVFSYRVDPYTLRSGDYVVHKKVGIGRFVGIRFDSAKNSSQASEYVFIEYADGMAKLPVNQASKMLYRYSLPNETKKPRTLSKLNDTGAWERRKVKGKVAIQKMVVDLMELYLHRLKQRRPAYLKTPALAEFEAQFPYEPTPDQKQAFIDVERDLTGQETPMDRLICGDVGFGKTEVAIRAIFCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEENLDMIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLDEVMTFLAESFPNVEIAIAHGKLFSKQLEDTMEKFALGEIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGLLSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGVDLFFEMLFESLSKVEDHCVVSVPYHSVQVDLNINPHLPSDYINYLENPMKIISDAERVAEKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITRIYTLGKMIFMKTNMSKKVFKLMIQSMASDLHKNSLLLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01597 819 Pfam CarD-like/TRCF domain 138 238 IPR003711 -
Vian2g01597 819 SUPERFAMILY TRCF domain-like 662 809 IPR037235 -
Vian2g01597 819 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 443 IPR014001 -
Vian2g01597 819 Gene3D - 141 201 - -
Vian2g01597 819 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 674 780 - -
Vian2g01597 819 Pfam Helicase conserved C-terminal domain 467 573 IPR001650 -
Vian2g01597 819 Gene3D - 138 652 IPR027417 -
Vian2g01597 819 SMART ultradead3 262 454 IPR014001 -
Vian2g01597 819 SUPERFAMILY CarD-like 132 200 IPR036101 -
Vian2g01597 819 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 452 618 IPR001650 -
Vian2g01597 819 Gene3D - 665 812 IPR037235 -
Vian2g01597 819 SMART TRCF_a_2_a 669 767 IPR005118 GO:0006281
Vian2g01597 819 Pfam TRCF domain 670 757 IPR005118 GO:0006281
Vian2g01597 819 SMART CarD_TRCF_2 137 239 IPR003711 -
Vian2g01597 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 587 IPR027417 -
Vian2g01597 819 CDD DEXHc_TRCF 252 445 - -
Vian2g01597 819 SMART helicmild6 490 574 IPR001650 -
Vian2g01597 819 Gene3D - 202 445 IPR027417 -
Vian2g01597 819 Pfam DEAD/DEAH box helicase 288 426 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01597 Vian-Chr2 33179135 33193823 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01597 - - gmx:100791900 1442.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01597 2 33179135 33193823 Vian2g01597 2 33179135 33193823 ECH