Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00958 ATGCCAGACCCTCACTCCATCACCCCGCTACCGCCGGAACAAACGGCGTCCGCCAGTTCTCAGACGCCGCCGGCCCGGCCACGCGAGCCGGAGCGTGCCCACGGCACTTCCAGCAGAGGCAACTGGAGTATCGGCGTTGGCTCCGCCGCCGCTGTCAGAGAGGAAACGTGTTCCTGCTTCGCCGTGGTCTTCAGCTTTTGGTTATTCGCTACAGTTTCGATGACTATGATACTGGGGGTTTATGGGTCCGTGACGATCGTGCTTGGTCCAACATCTTCGAAAGTTTTCCAACCAAGTTCCGTGTTCGTGAAATCTGTGAAGGTAGAAAATTTGATGGGAAATCATGGAGGCCGACCCATTCTTTATGGTACATATGGGTATCCACCACTTGATGTTTTTAGCAGTTGGGGTGAGACTCTTAACGTGTCTCTTCCCTCTGGCGCAGAAAAGGCAAATGCTGCAAACGTCTTTCTCACTCCTTTGTTATGTCTTCCACAGGAATGGAAACTTTATCTAAACAGAGGGAGTGCAATAAATATTTCGTATCACGTTAGTTCTAGGAGCTCTTCTGTTTTCCTTATAGTTGCTCAGGGGACGGAGGCCTTCACTCGGTGGTTGGAGAACCCAACAGAACCTAACACAACTCTGTCATGGAATGTGATTCATGGGGGATTGACTTTTCTTGTGTTTTGGTCCTTCAATTTATTGAACAACCTTCAGTCTGCTCATGAAGGTGGAGCAGGACATAGAAGTGTGGGAACAGAACCTCAGAGGGCACCTCTGCTTTCTCACAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTGCCACAAGACGAGGAAGATCTTGATTTTCTTCCAGGAGGCCCCATTGATGGGAAGCTTCCTGGTGATGGTCAAACCAGTAACAATACACGGCGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTTCTTCCGTGTGGCCACTGTGTGGCTTGTTTTGCTTGTGGAACAAGGATAGCTGAGGCATCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGCAAATGGTGGCTGCTGGTGAGGATCATATTAGCCATTGCACTGCCTCTAGTGCAGTAGCCGCTAGATGA 1137 0.4925 MPDPHSITPLPPEQTASASSQTPPARPREPERAHGTSSRGNWSIGVGSAAAVREETCSCFAVVFSFWLFATVSMTMILGVYGSVTIVLGPTSSKVFQPSSVFVKSVKVENLMGNHGGRPILYGTYGYPPLDVFSSWGETLNVSLPSGAEKANAANVFLTPLLCLPQEWKLYLNRGSAINISYHVSSRSSSVFLIVAQGTEAFTRWLENPTEPNTTLSWNVIHGGLTFLVFWSFNLLNNLQSAHEGGAGHRSVGTEPQRAPLLSHKDDDLSSWGSSYDSLPQDEEDLDFLPGGPIDGKLPGDGQTSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEASGTCPVCRRNMKKQMVAAGEDHISHCTASSAVAAR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00958 378 ProSiteProfiles Zinc finger RING-type profile. 312 351 IPR001841 -
Vian2g00958 378 PANTHER OS05G0521000 PROTEIN 220 356 - -
Vian2g00958 378 SUPERFAMILY RING/U-box 311 357 - -
Vian2g00958 378 Pfam Zinc finger, C3HC4 type (RING finger) 309 356 - -
Vian2g00958 378 SMART ring_2 312 350 IPR001841 -
Vian2g00958 378 FunFam E3 ubiquitin-protein ligase APD2 301 359 - -
Vian2g00958 378 MobiDBLite consensus disorder prediction 246 269 - -
Vian2g00958 378 MobiDBLite consensus disorder prediction 10 24 - -
Vian2g00958 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 360 IPR013083 -
Vian2g00958 378 Pfam Domain of unknown function (DUF4792) 166 202 IPR032008 -
Vian2g00958 378 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00958 - - lang:109359922 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00958 2 16142522 16151206 Vian2g00958 2 16142522 16151206 ECH