Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00669 ATGGCAGAGCAAAATCTAAGGTATGCTGTTGTAACTGGAGCAAATAAAGGGATAGGGTTTGAGACTGTTAAACAGTTGGCCTCAAATGGAGTGAAGGTGGTGCTCACAGCCAGAGATGAGAACAGAGGTCAAGAAGCCATTGGGAAATTGAAAGATTATGGTCTCTCTGATTTGGTGACTTTTCACCAGCTTGATGTCACTCACTCTGCTAGTATTCATTCTCTAGTAGAATTTGTTAAGACACAGTTTGGGAAACTTGATATTTTGGTGAACAATGCAGGAATAAATGGTGTCAATCTGGATGAAGTGGAGGAGGGATCAGCATTTAACTGGGGGGAACTCACTCAAACTTATGAGATGGTTGAAAAGTGCCTAACAACAAACTACTATGGTGCAAAGCAAGTAACTGAGGCATTTCTTCCCCTTCTGCAATTATCCAACTCTCCAAGGATTGTGAATGTTTCCTCCCAATCGGGATTGTTAAAGAACATAGCACACGAATGGGCTAAAGGGGTGCTTAATGATGCTGAAAATCTTACAGAAGAGAAAATAGACGAGGTGCTCAGAGAGTTTATCAAAGACTTCAAAGAAGATTCCTTAGAAACTAAAGGCTGGCCAACCTTCGTGTCTGCCTATATTGTCTCAAAAGCAGCCATGAATTCATACACAAGGATTCTAGCAAAGAAGCATCAAAACGTGATTATTAACAGTCTGTGCCCGGGTTTTGTGAAAACAGACATCAACAAAAACTCTGGCATCTTATCAGTTGATGAAGGTGCTGCTAGTGTTGTGAGATTGGCACTTTTTCCTGATGGTTCCCCTTCTGGCCTTTTCTATGTTAGGCAAGAATTGTCCAACTTTTAA 864 0.4109 MAEQNLRYAVVTGANKGIGFETVKQLASNGVKVVLTARDENRGQEAIGKLKDYGLSDLVTFHQLDVTHSASIHSLVEFVKTQFGKLDILVNNAGINGVNLDEVEEGSAFNWGELTQTYEMVEKCLTTNYYGAKQVTEAFLPLLQLSNSPRIVNVSSQSGLLKNIAHEWAKGVLNDAENLTEEKIDEVLREFIKDFKEDSLETKGWPTFVSAYIVSKAAMNSYTRILAKKHQNVIINSLCPGFVKTDINKNSGILSVDEGAASVVRLALFPDGSPSGLFYVRQELSNF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00669 287 CDD carb_red_PTCR-like_SDR_c 7 287 IPR045313 GO:0016616
Vian2g00669 287 FunFam (+)-neomenthol dehydrogenase 2 287 - -
Vian2g00669 287 Gene3D - 3 287 - -
Vian2g00669 287 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
Vian2g00669 287 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vian2g00669 287 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Vian2g00669 287 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vian2g00669 287 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Vian2g00669 287 Pfam short chain dehydrogenase 208 251 IPR002347 -
Vian2g00669 287 Pfam short chain dehydrogenase 8 163 IPR002347 -
Vian2g00669 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vian2g00669 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Vian2g00669 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Vian2g00669 287 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 284 - -
Vian2g00669 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 273 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00669 Vian-Chr2 8765157 8766859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00669 9 248 Miscellaneous Gene Families AT2G29150 29.630 6.73e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00669 K15095 - vun:114183121 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00669 2 8765157 8766859 Vian2g00669 2 8765157 8766859 ECH
Vian9g00709 9 9126333 9128002 Vian2g00669 2 8765157 8766859 PCT