Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00600 ATGTCTTCCCCAAGCAAGCGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTCCATGGACCCAATGGCATTGTTAGTGTGAATACGGAACTGATGTCTAGCCAGAAAGGGATTGGTCCTTATCATGGTGGTGTGTGGAAAGTGAGAGTTGAGTTGCCTGATGCTTATCCTTATAAATCTCCTTCCATTGGCTTTGTCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCACAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGACCGATCTGCTTATGAGATAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAGCCTGAAGACATAGGGGAAGTCACAGAAGAGAAATCCAGTGATGAGGAAATGAGTGAAGATGAATCTGATTCTAGTGATGAGCAGGTTGTTGGTAAAGCAGACCCCTAG 597 0.4238 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNGIVSVNTELMSSQKGIGPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRSAYEIRVKEYCEKYAKPEDIGEVTEEKSSDEEMSEDESDSSDEQVVGKADP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00600 198 MobiDBLite consensus disorder prediction 165 198 - -
Vian2g00600 198 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 104 IPR023313 -
Vian2g00600 198 SMART ubc_7 4 163 - -
Vian2g00600 198 CDD UBCc 7 158 IPR000608 -
Vian2g00600 198 SUPERFAMILY UBC-like 4 163 IPR016135 -
Vian2g00600 198 FunFam Ubiquitin-conjugating enzyme 5, E2 1 174 - -
Vian2g00600 198 Gene3D Ubiquitin Conjugating Enzyme 1 177 IPR016135 -
Vian2g00600 198 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 151 - -
Vian2g00600 198 MobiDBLite consensus disorder prediction 171 187 - -
Vian2g00600 198 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 163 IPR000608 -
Vian2g00600 198 Pfam Ubiquitin-conjugating enzyme 18 157 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00600 Vian-Chr2 7342723 7345005 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00600 K10576 - gmx:100805356 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00600 2 7342723 7345005 Vian2g00600 2 7342723 7345005 ECH
Vian2g00600 2 7342723 7345005 Vian9g00656 9 8145865 8148154 PCT