Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00512 ATGGCGGAAAATTCTTCAACGGAGCTGAAAAAGTTTGTGTTTTTTTGTTTGCTGCTGATACAAGTTGCAGTTTCTGAAATTATATTTGAAGAACGCTTTGAGGATGGATGGCGAAGTCGGTGGGTAAAATCAGACTGGAAAAGCAGTGAGGGCAAAGCAGGTTCTTTCAAACACACAGCTGGGCAATGGCATGGTGATCCTGACGATAAAGGTATTCAAACATCCAGTGATGCCAAACACTTTGCCATCTCTGCTAAAATACCAGAGTTCACCAACAAGAACAGAACATTGGTCCTCCAGTATTCTGTAAAATTTGAACAGGAGATTGAGTGTGGTGGAGGTTACATCAAGCTTCTCTCTGGATTTGTTAATCAAAAGAAGTTTGGTGGGGATACACCTTATATTTTAATGTTTGGACCAGATTTATGTGGCACTGATACAAAGAAACTCCACGTGATACTCTCCTACCACGGTCAAAACTACCCCATAAAGAAGGACCTGCAGTGTGAAACTGACAAGTTAACTCATTTCTACACATTCATTCTCAGGCCAGATGCCACATACAGTGTCCTGGTTGATAATAGAGAGAGAGATTCTGGAAGCATGTATACAGATTGGGATATTCTTCCTCCAAGAAAAATCAAAGATGTCAAGGCCAAAAAGCCTGCAGACTGGGAAGAAAGAGAATACATTGAAGACCCTGATGATGTCAAACCTGAGGGATATGATTCAATCCCAAGAGAAATTCCTGACCCAAATGCTAAAGAGCCTGATAACTGGGATGAAGAAGCGGATGGGAAATGGAAACCACCAAAGATACCGAATCCAGCATACCGAGGACCATGGAAAAGAAAGAAAATCAAGAACCCTAACTACAAAGGGAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTGAAGATGACCCAGATCTTTATGTGCTTAAGCCTATCCAGTATGTGGGCATTGAAGTATGGCAGGTTAAAGGCGGTTCAGTTTTTGACAACGTTTTGATATGTGATGATCCTGATTATGCAAAACAAGTTGTTGAGGAAGTGTTTGCCAACAGGGAGATTGAAAAGGAAGGTTTTGAGGAAGCAGAGAAAGTGAGAAAAGTCAGAGAAGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGACGTAGGAAAGAGAGAGGTCATGATCGTAGATACCGGGACAGATACAGAGACAGATACAGAAGGCATCGCCATTACGACGATTATCATGACGAGCTTTAA 1263 0.4173 MAENSSTELKKFVFFCLLLIQVAVSEIIFEERFEDGWRSRWVKSDWKSSEGKAGSFKHTAGQWHGDPDDKGIQTSSDAKHFAISAKIPEFTNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFGGDTPYILMFGPDLCGTDTKKLHVILSYHGQNYPIKKDLQCETDKLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWEEREYIEDPDDVKPEGYDSIPREIPDPNAKEPDNWDEEADGKWKPPKIPNPAYRGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIQYVGIEVWQVKGGSVFDNVLICDDPDYAKQVVEEVFANREIEKEGFEEAEKVRKVREEEEAQRAREEGERRRKERGHDRRYRDRYRDRYRRHRHYDDYHDEL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00512 420 MobiDBLite consensus disorder prediction 225 275 - -
Vian2g00512 420 MobiDBLite consensus disorder prediction 49 68 - -
Vian2g00512 420 Gene3D - 26 385 - -
Vian2g00512 420 PIRSF Calreticulin 6 416 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Vian2g00512 420 PANTHER CALRETICULIN AND CALNEXIN 12 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 Coils Coil 365 394 - -
Vian2g00512 420 Gene3D Calreticulin/calnexin, P domain 211 312 IPR009033 GO:0005509|GO:0005515
Vian2g00512 420 MobiDBLite consensus disorder prediction 370 397 - -
Vian2g00512 420 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 Pfam Calreticulin family 30 264 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Vian2g00512 420 MobiDBLite consensus disorder prediction 225 269 - -
Vian2g00512 420 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Vian2g00512 420 FunFam Calreticulin 1b 26 210 - -
Vian2g00512 420 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vian2g00512 420 FunFam Calreticulin 211 312 - -
Vian2g00512 420 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 224 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00512 Vian-Chr2 6177461 6183459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00512 12 342 Miscellaneous Gene Families AT5G61790 34.772 5.97e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00512 K08057 - gmx:100801827 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00512 2 6177461 6183459 Vian2g00512 2 6177461 6183459 ECH