Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00509 ATGTTGGTGTTCTTCATTTGCGTATTGGTTTTCTTCATCTTTCTGTACAAATTCCTCACCGCTTATGGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAACGCGAAGAAATTGAAGATAAGGTTGTTTGGATTACTGGCGCTAGCCGTGGAATTGGGGAGATTTTGGCTAAACAGCTTGCAAGTTTAGGGGCCAAGCTTATAATCTCTGCGAGGAATGAAGTTGAGCTAAGCCGAGTAAGGACACAACTGAAAGGTAAGCATGCACCTGATGAAGTCAAGATTTTACCATTGGATTTATCCTCTGGAGAGGATTCTCTAAGGATAGCTATTGAGAAAGCAGAATCCTTTTTTCCGGATTCCGGTGTTGATTACATGATCCATAATGCAGCTTTTGAGCGTCCTAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAGGCTACATTTGATGTCAATGTTTTTGGGACAATAGCTCTTACAAAGCTCTTGACACCTTTCATGTTAAAGAGGGGGCATGGTCATTTTGTGGTGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTCTGCTTCCAAATATGCGCTCAATGGTTACTTCCATACCTTGCGTTCAGAGCTCTGTCAGAAAGGGATCCGAGTTACTGTGGTCTGTCCTGGTCCAATAGAAACGTCAAATAATGCTGGATCAAAGGTTCCATCTGAGAAGCGTGTGTCATCTGAAAGGTGTGCGGAGCTGACTATCATTGCTGCAACCCATGGCTTAAAGGAAGCTTGGATATCATATCAGCCTGTGCTTGCTGTCATGTATCTTGTTCAGTACATGCCATCTGTTGGTTATTGGCTCATGGACAAGGTTGGCAAAAATCGAGTAGAAGCTGCCGAAAAGAAGGGAAACACATATTCTTTGAGCTTACTGTTTGGAAAAAAGAAGGCCACTTGA 960 0.4292 MLVFFICVLVFFIFLYKFLTAYGDFTLMSKKQPKREEIEDKVVWITGASRGIGEILAKQLASLGAKLIISARNEVELSRVRTQLKGKHAPDEVKILPLDLSSGEDSLRIAIEKAESFFPDSGVDYMIHNAAFERPKTSILDVTEEGLKATFDVNVFGTIALTKLLTPFMLKRGHGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHTLRSELCQKGIRVTVVCPGPIETSNNAGSKVPSEKRVSSERCAELTIIAATHGLKEAWISYQPVLAVMYLVQYMPSVGYWLMDKVGKNRVEAAEKKGNTYSLSLLFGKKKAT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00509 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 290 IPR036291 -
Vian2g00509 319 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Vian2g00509 319 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Vian2g00509 319 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Vian2g00509 319 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Vian2g00509 319 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Vian2g00509 319 Pfam short chain dehydrogenase 41 234 IPR002347 -
Vian2g00509 319 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 318 - -
Vian2g00509 319 Gene3D - 23 298 - -
Vian2g00509 319 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 41 230 - -
Vian2g00509 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00509 Vian-Chr2 6139316 6143401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00509 1 225 Lipid Metabolism Gene Families AT1G67730 27.826 1.94e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00509 K11165 - gmx:100795991 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00509 2 6139316 6143401 Vian2g00509 2 6139316 6143401 ECH