Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00508 ATGGAGGTTGTTTCTCAGCCTCTGTGCACCATTCTATTCGCCACGCGCAAACGCTCTCTTCTCATTCCAAAACAAATCCCCAATCCTTCTAAGCACTTCCCCTTCTTATCTTTTCGCGCCACCATTCTCTCCTCTTCGCGTGTTTCTCCACCGTCTCTTCTGTTCGCGGCGCCGGAGAACCAGTTGAGTGTCGGTGAAGGAGAGAACACCGATGCCAGTGAATGGGCTCTGCAAGATTTTTACTCCCTCAGGAGGGATGTTGAAATTATGTTGCAACGTGTTGAAGAGATTAGAGAGTCTTCTGGTCTACAACTATTGGAGCAAGAACTTGCCAATTTGGAGGAGCAAGCAGCAGATATCTCTTTCTGGGACAATCGGGCCAAAGCTCAAAACATTCTTTCGACCTTGGCTGATGTCAAAGAGAAGATAAAATTACTCAATGATTTTAAAACCCAGGTTGAGGATGCAGAAACAATAGTTATGCTGACTGAGGAAATGGAATCCATTGATAGAGGACTTTTTGATGAGGCCACCAATCTTATTAAAGAACTGAATAAATCACTAGATCGATATGAGCTGACTCAACTTCTCTCTGGTCCTTATGATAAAGAAGGTGCTGTTATCTCTATTACAGCAGGTGCTGGTGGTACTGATGCCCAGGATTGGGCAGACATGCTTCTTAGAATGTACATGAGATGGAGTGAGAAACAAAGATACAAGACCAGAGTGATTGAGAAATCCCCCGGAGAAGAAGCTGGAATTAAGTCTGCCACTGTTGAAGTTGAAGGTCGTTATGCATATGGGTATTTGTCTGGGGAGAAAGGAACGCATCGCATTGTTCGTCAATCACCTTTTAATGCCAAAGGGCTTCGTCAGACAAGCTTTTCTGGTGTTGAGGTTATGCCTCTTCTTCCAGAGGAATCTATGGATGTTGAAATTCCCGAGGAGGACCTGGATATTAGTTTTTCAAGAGCAGGTGGAAAGGGAGGTCAGAATGTCAACAAGGTTGAAACTGCAGTTCGGATTACACACATTCCAACTGGTGTCACTGTTCGCTGCACAGAGGAGAGATCGCAACTGGCGAATAAGATCAAAGCTTTAAGCCGTTTGAAAGCCAAGTTGTTGGTTATAGCTGAAGAGCAGCGCGCATCAGAGATTAAGCAGATTCGAGGGGACGCAGTCAAGGCTGAATGGGGACAACAAATACGGAACTATGTATTCCATCCATACAAACTAGTCAAAGATGTAAGAACAGGGCATGAAACCACAGATGTCATCTCTGTAATGGATGGCGAGTTGGACCCTTTCATCAAATCTTACCTCAAATACAAGCTCAATATGTCACTGTCTACAAGCGGGGTTAACTAA 1368 0.4452 MEVVSQPLCTILFATRKRSLLIPKQIPNPSKHFPFLSFRATILSSSRVSPPSLLFAAPENQLSVGEGENTDASEWALQDFYSLRRDVEIMLQRVEEIRESSGLQLLEQELANLEEQAADISFWDNRAKAQNILSTLADVKEKIKLLNDFKTQVEDAETIVMLTEEMESIDRGLFDEATNLIKELNKSLDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWSEKQRYKTRVIEKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLDISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETTDVISVMDGELDPFIKSYLKYKLNMSLSTSGVN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00508 455 Gene3D - 208 438 - -
Vian2g00508 455 Coils Coil 174 194 - -
Vian2g00508 455 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 78 445 - -
Vian2g00508 455 Pfam RF-1 domain 308 417 IPR000352 GO:0003747|GO:0006415
Vian2g00508 455 Gene3D - 304 400 - -
Vian2g00508 455 Gene3D Release factor 86 201 - -
Vian2g00508 455 SUPERFAMILY Release factor 106 445 IPR045853 -
Vian2g00508 455 Coils Coil 96 116 - -
Vian2g00508 455 SMART PCRF_a_2 161 273 IPR005139 GO:0006415
Vian2g00508 455 Pfam PCRF domain 106 298 IPR005139 GO:0006415
Vian2g00508 455 Hamap Peptide chain release factor 2 [prfB]. 79 445 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vian2g00508 455 NCBIfam peptide chain release factor 2 90 442 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vian2g00508 455 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 324 340 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00508 Vian-Chr2 6133012 6138735 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00508 K02836 - gmx:100775574 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00508 2 6133012 6138735 Vian2g00508 2 6133012 6138735 ECH