Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00398 ATGTATACTGACGGTTATACTGCTCTAGTTACAAACTTATCTCCAAGAGCAACAGAGAACGATGTACACAATTTTTTTGCTTATTGTGGTCTAATTGAGCATGTTGAAATAATAAGATCTGATGACAATGCATCTACTGCATATGTGACTTATCGGGATGCCTATGCACTTGAAACTGCACTATTGCTAAATGGATCAATGATATTGGACCAATGTATATTCATTTCACGCTATGAAGCTTACGTAAATGACTATGATGATTGGGGTAGTCATGTATCAAAGCCTGAACACAGTATTACAATCTCACAAGATGATCGCATGGATAAGTTTGTTTCTTCCCCTGGAGAAGCACTAACTCTGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGCTATGTGTTGGGAAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCATAATGTGTCGTCTACAGCATCATCAAAGGTTGCTGAACTCAGCAATAAAATTGGCTTGACTGATTCCATTAATTCAGGCATTGAAACTTTTAAATCTGTGGATGAGAAGTATCATGTCACAGACTTCACCAAATCAGCCGCAACAGTCACAGGGACAACAGCTATAGTTGTTGCATCAGTTACCGGTAAAGCTGCTGTGGCAGCTGGAAATGCTATAGCCAACAGTAGGTACTTTGCCAAAGGTGCTCTTTGGGTTTCAGATATGTTGACACGTGCAGCCAAAGCAACTGCTGATTTGGGTCAGAGTGAAAAGAAATGA 768 0.401 MYTDGYTALVTNLSPRATENDVHNFFAYCGLIEHVEIIRSDDNASTAYVTYRDAYALETALLLNGSMILDQCIFISRYEAYVNDYDDWGSHVSKPEHSITISQDDRMDKFVSSPGEALTLAQVVVKTMVAKGYVLGKDAFVMAKAFDESHNVSSTASSKVAELSNKIGLTDSINSGIETFKSVDEKYHVTDFTKSAATVTGTTAIVVASVTGKAAVAAGNAIANSRYFAKGALWVSDMLTRAAKATADLGQSEKK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00398 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 72 IPR000504 GO:0003723
Vian2g00398 255 Gene3D - 2 82 IPR012677 -
Vian2g00398 255 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
Vian2g00398 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vian2g00398 255 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 7 254 - -
Vian2g00398 255 SMART rrm1_1 7 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00398 Vian-Chr2 4595146 4597889 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00398 - - gmx:100784005 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00398 2 4595146 4597889 Vian2g00398 2 4595146 4597889 ECH