Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04212 ATGCGTGAGATTCTGCACATTCAGGGAGGGCAATGCGGGAACCAAATAGGAACAAAGTTCTGGGAGGTGGTGTGTGATGAACATGGGATTGACCCTACGGGGCAATACGTAGGGAACACCGAACTTCAGCTTGAAAGAGTGAACGTTTATTACAATGAGGGCAGCAATGGTCGATACGTGCCACGGGCAGTGCTTATGGACCTTGAGCCTGGTACCATGGATGCTGCCCGCACAGGCATTTATGGCCAGATTTTCCGGCCGGACAACTTTATTTTCGGCCAGTCTGGTGCCGGAAACAACTTTGCAAAGGGCCACTACACTGAGGGTGCTGAGCTTATTGACTCTGTCCTCGATGTTGTAAGGAAGGAGGTTGAGAATTGTGACTGCTTGCAAGGATTTCAAGTGTGTCACTCCTTGGGAGGGGGAACGGGTTCTGGAATGGGAACTCTGCTGATTTCGAAGATAAGAGAGGAGTACCCTGATCGGATGATGCTTACATTCTCTGTGTTTCCATCTCCAAAGGTGTCAGACACGGTTGTTGAGCCTTATAATGCTACACTTTCTGTTCACCAGTTGGTGGAGAATGCTGACGAGTGTATGGTCCTTGACAATGAAGCACTATATGACATCTGCTTCAGGACCCTCAAGCTCAGTACACCAAGCTTTGGAGACTTGAATCATTTGATATCAGCAACAATGAGTGGAGTTACTTGTTGCTTAAGATTTCCGGGTCAGCTCAATTCAGACCTGAGAAAGTTAGCAGTAAACTTGATCCCATTTCCGCGACTTCACTTCTTCATGGTGGGTTTTGCTCCTCTGACATCTCGAGGATCGCAGAACTACCGTGCATTGACTTGGATTCCCAACAATGTGAAGTCTAGTGTTTGTGACATTCCTCCCAAAGGCCTTTCTATGGCTTCGACTTTTGTTGGTAACTCTACATCCATACAGGAGATGTTCAGGAGAGTGAGTGAGCAGTTCACAGCCATGTTCAGAAGGAAAGCCTTCTTGCACTGGTACACTGGAGAAGGAATGGATGAGATGGAGTTTACTGAAGCAGAGAGTAACATGAATGATCTTGTTGCAGAGTATCAACAGTACCAGGATGCATCTGCTGGTGATGATGATGATTCTGGAGAAGAGGAAAATGAGGGTGCTGAGAGCTGA 1167 0.4722 MREILHIQGGQCGNQIGTKFWEVVCDEHGIDPTGQYVGNTELQLERVNVYYNEGSNGRYVPRAVLMDLEPGTMDAARTGIYGQIFRPDNFIFGQSGAGNNFAKGHYTEGAELIDSVLDVVRKEVENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQNYRALTWIPNNVKSSVCDIPPKGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDASAGDDDDSGEEENEGAES 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04212 388 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 FunFam Tubulin beta chain 316 377 - -
Vian1g04212 388 PRINTS Beta-tubulin signature 230 239 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Beta-tubulin signature 245 258 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Beta-tubulin signature 265 281 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g04212 388 MobiDBLite consensus disorder prediction 373 388 - -
Vian1g04212 388 Gene3D Tubulin/FtsZ, GTPase domain 1 314 IPR036525 -
Vian1g04212 388 PANTHER TUBULIN 3 286 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 CDD beta_tubulin 2 368 - -
Vian1g04212 388 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vian1g04212 388 Coils Coil 350 370 - -
Vian1g04212 388 SUPERFAMILY Tubulin C-terminal domain-like 244 370 IPR008280 -
Vian1g04212 388 Gene3D Helix hairpin bin 316 371 IPR023123 -
Vian1g04212 388 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Vian1g04212 388 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Vian1g04212 388 SMART Tubulin_4 47 244 IPR003008 GO:0005525
Vian1g04212 388 FunFam Tubulin beta chain 1 262 - -
Vian1g04212 388 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
Vian1g04212 388 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04212 Vian-Chr1 65083968 65085491 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04212 K07375 - pop:7486729 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04212 1 65083968 65085491 Vian1g04212 1 65083968 65085491 ECH