Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04209 ATGGCTTCAATGTCCATCACTCTTACTGCAATCTTCTTTCTAGTCTCTACTTTCTCACCGCTCAGCGCTTCAGCACCGGCGTCATTCGTACTTTACAACAAATGTCCGCACCCAGTGTGGCCCGGGATCCAGCCCAGTGCCGGAAAGCCCATTCTAGCCCGTGGAGGTTTCAAGCTCGCCTCCAACCGGGCCTACACTCTCCAACTCCCAGCCCTCTGGTCGGGCCGCTTCTGGGGCCGTCACGGCTGCACCTTCGACGCCTCCGGACGAGGCCGCTGCGCCACTGGCGACTGCGGCGGGTCCCTCTACTGCAATGGCATCGGCGGAACCCCTCCGGCCACCCTGGCCGAGTTCACCCTCGGCAACGAGCAGGACTTCTACGACGTTAGCCTTGTGGACGGGTACAACCTGCCCATCTCCATCACCCCCTTCAAGGGATCCGGAAAATGCAGCTACGCCGGCTGCGTCAGCGACCTCAACACCATGTGCCCAGTGGGCCTGCAGGTGCGTTCACGCGACAACAAACGCGTGGTGGCCTGCAAGAGCGCCTGCTCCGCTTTCAACTCCCCCAAGTACTGCTGCACGGGCTCCTACGGAAGCCCGCAGGCCTGCAAGCCCACCGTTTATTCGAAGATCTTCAAGACCGCTTGCCCCAAGGCCTATTCCTACGCCTACGACGACCCCACCAGCATCGCCACCTGCACCAAAGCTAACTATTTGCTCACTTTCTGCCCTCATCGCCACTGA 747 0.6078 MASMSITLTAIFFLVSTFSPLSASAPASFVLYNKCPHPVWPGIQPSAGKPILARGGFKLASNRAYTLQLPALWSGRFWGRHGCTFDASGRGRCATGDCGGSLYCNGIGGTPPATLAEFTLGNEQDFYDVSLVDGYNLPISITPFKGSGKCSYAGCVSDLNTMCPVGLQVRSRDNKRVVACKSACSAFNSPKYCCTGSYGSPQACKPTVYSKIFKTACPKAYSYAYDDPTSIATCTKANYLLTFCPHRH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04209 248 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Vian1g04209 248 PRINTS Pathogenesis-related protein signature 89 118 IPR001938 -
Vian1g04209 248 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Vian1g04209 248 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Vian1g04209 248 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vian1g04209 248 FunFam Thaumatin-like protein 1a 27 245 - -
Vian1g04209 248 SMART tha2 29 245 IPR001938 -
Vian1g04209 248 PIRSF PR5 1 248 IPR001938 -
Vian1g04209 248 CDD TLP-PA 28 244 - -
Vian1g04209 248 Pfam Thaumatin family 33 245 IPR001938 -
Vian1g04209 248 SUPERFAMILY Osmotin, thaumatin-like protein 28 246 IPR037176 -
Vian1g04209 248 ProSitePatterns Thaumatin family signature. 89 104 IPR017949 -
Vian1g04209 248 Gene3D Thaumatin 27 245 IPR037176 -
Vian1g04209 248 PANTHER OS03G0233200 PROTEIN 14 245 IPR001938 -
Vian1g04209 248 ProSiteProfiles Thaumatin family profile. 27 247 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04209 Vian-Chr1 65066445 65067191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04209 7 246 Receptor kinase-like Gene Family AT5G38280 45.344 1.62e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04209 - - gmx:100784636 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04209 1 65066445 65067191 Vian1g04209 1 65066445 65067191 ECH