Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04207 ATGGCTGATACATTCGATGAAGAGTGCGACTTTCTCTTCAAAGCTGTTCTGATTGGAGACTCTGGAGTTGGGAAATCGAATCTGCTCTCAAGGTTTGCAAAAGACGAATTCAGGTTGGATTCCAAACCCACAATAGGAGTTGAATTTGCTTACCGGAACATCAAGGTCGGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCAGGCCAAGAAAGGTTTAGAGCAATCACGAGTTCGTACTACCGAGGGGCTTCGGGGGCAGTGCTGGTGTATGATATAACGATGAGATCAAGCTATGAGAATGTGAGGAAGTGGCTATTGGAGCTGAGAGAGTTCGGAGGGGAAGAGATGGTGGTTGTTCTTGTGGGAAACAAATGCGATCTGGATCAATCGAGAGAGGTTGAGAAAGAAGAAGGAAAAGGGTATGCTGAAACAGAAGGGTTGTGCTTCATGGAAACCTCTGCTTTGAAGAATCTCAACGTTGAAGAAGTGTTCTTGCAAATGATCACAAGGATTTATCACATGACAAGGCAGAAGAATTTGGCAGCAAAAATGGACGAGAAACCGATTAATCTTCTGAACGGGAAGGAGATTCATGTTGCTGATGAAGTCACTGCAACCAGACAACCTAGTTCTTGCTGTTCGTGA 651 0.4455 MADTFDEECDFLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGASGAVLVYDITMRSSYENVRKWLLELREFGGEEMVVVLVGNKCDLDQSREVEKEEGKGYAETEGLCFMETSALKNLNVEEVFLQMITRIYHMTRQKNLAAKMDEKPINLLNGKEIHVADEVTATRQPSSCCS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04207 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Vian1g04207 216 PANTHER DRAB11-RELATED 7 185 - -
Vian1g04207 216 ProSiteProfiles small GTPase Ras family profile. 7 216 IPR001806 GO:0003924|GO:0005525
Vian1g04207 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 191 IPR027417 -
Vian1g04207 216 ProSiteProfiles small GTPase Rab1 family profile. 6 215 - -
Vian1g04207 216 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Vian1g04207 216 FunFam ras-related protein RABA5a 5 215 - -
Vian1g04207 216 CDD Rab11_like 10 174 - -
Vian1g04207 216 NCBIfam small GTP-binding protein domain 14 166 IPR005225 GO:0005525
Vian1g04207 216 Gene3D - 5 215 IPR027417 -
Vian1g04207 216 SMART ran_sub_2 18 208 - -
Vian1g04207 216 SMART ras_sub_4 10 176 - -
Vian1g04207 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Vian1g04207 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Vian1g04207 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Vian1g04207 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Vian1g04207 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Vian1g04207 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Vian1g04207 216 SMART rab_sub_5 13 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04207 Vian-Chr1 65054835 65056822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04207 14 177 EF-hand Containing Proteins AT5G27540 28.409 5.28e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04207 K07976 - gmx:100781746 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04207 1 65054835 65056822 Vian1g04207 1 65054835 65056822 ECH