Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04184 ATGCCTATGGCATATTCCGGCATATTTCAGGGCTTCTTCAGATTCAAAACCATGTCGCGGCTTCGCTGCACTCCTCTCAGACCTTACTTTTCATCCATTTCCATCACTCCTCTTCACCGCACCGCCATTCGCCTCCGCTCCTCCTCCACCGCGCTTAAAGTTGTCAACGTCACGCGCCCGAGGACCGTCGCGCGCCAGGGGACCGTTACGTTGCCTTTCTGGCACCAGCGCAGCTCCAGCTATGGTCGTTTTGCGTACCAGGATGTGTCCAGTGACGACTCCGATGTGGAATTCGCTTCTCATCCCTCTCATAGCCAACAAGTGGGTGATTCAACGCTCGAGAACATTGACGAGTGGAGATGGAAGCTGACCATGCTTATGCGCTCCAAAGACGAACTAGAAGTGGTGTCCAGAGAGAAGAAGGACCGTCGCGACTTCGAGCAGCTTTCCACTTTGGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCAAGAGTTGTCGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAACGCCCACAGAGAGAGGTATTTAATTTCTTTGCAATTTCGGAGTTGGTAGTCTTACCATTTGATGTTCATAAAGAAGTAGATGCCCGTCTCCATGCCCATCTCTCACAAAAGGCTACAGCAAGCAAGTGGAGTTATTTGAATGACTCATTGCATAAATCAAGTGATAATATAAACATTCCAGCTAATAAAGGAATGCATGAACAGCCAGAACCCTTGACTCACAATAGTGTTGTCAAGGAGAAAATCCTGCAACGAAGAAGTTTGCAACTGCGTCATCGGCAACAAGATTGGCAGGAATCTCCTGAAGGGCAAAAGATGCTCAAATTTCGTAGAAGTCTTCCTGCTTTCAAAGAGAAGGATGCATTTTTGAGACTTATTTCAGAGAATCAGTTTATATTAAGTGGTATCGTCAATGAAAAAATGCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAAACCGAAGCTGCACGCGGAGCTGTATGTAACATAATTTGTACTCAGCCCAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAGTTAGGAGAATCTGTTGGATACAAAGTTCGTTTGGAGGGTATGAAAGGGAGAGATACCCGTCTTCTTTTTTGCACCACTGGTGTATTACTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTCGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAAATTCTTCCTCATCGACCTGATTTGAGATTGGTTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGAACTAGACATCGGTTGACACCTTCTAATCAAATTGATGACTATGGTCAAGAAAAAACGTGGAAAATGCAGAAACAAGCTCAAGCTTTCAGAAGAAAAAAGAGCCAAATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCGGACTTTAAGGGATATAGCCTACGCACCCAAGATTCATTGTCCTGTTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGTCACATTGTTAAGAATGAAAGGCCAGGAGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGCTCATCCTTTGTTGGGTGATCAGAGCAAAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAAGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTGGCAACTAACATGGCTGAGACTAGTATTACCATTAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCATATGACGCATTAAATAACACTCCTTGTTTGCTTCCGTCTTGGATCTCAAAAGCTGCAGCCCGGCAGGTTGAAAATGCTGTTGAATATTTGAAGATTATCGGGGCCTTAGACGGGAATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTAGGAACCATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTAAGTGTAAGAGATCCATTTGTGACGCCATCTGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCCCAATTTGCTGCTCGTGAATATAGTGATCATCTTGCCCTTGTCCGGGCTTATGAGGGTTGGAAAGATGCTGAGACACAGCAAGCTGGTTATGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAAGGCCATTGAGTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTCAATGACAAGCCTGAAACCTACAATGCATGGAGTCATGAAGTGCATCTCATCCGAGCAGTCATCTGTGCGGGTTTGTTTCCCGGAATATCTTCTGTTATGAACAAAGATAAGTCAATAGCACTGAAGACAATGGAGGATGGTCAGGTTCTCTTGTATTCTAGCTCTGTAAATGGCTGTGTACCCAGAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTCAGAGATTCAACTGGTATATCTGATTCGGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTTGATGGTCACCTGAAAATGTTGGGAGGCTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAATACTTACTTAAGCTTAAAGATGGAACTGGAAGAATTGATACAGAAAAAGCTTCAGGATCCCACGCAGGAAACACAATCGCATAGTCAGCTCCTTTCAGCTGTTAGATTGTTGGTTTCAGAAGACCATTGTGATGGTAGGTTTGTCTTTGGTCGCCAAGTCCTATCACAGGTAAAGAAGGAAACAAACTCCAAAAGTGGAGTCGAGGCTGAAAATTTTAAAAATCAACTTCAGTCATTTCTTAACAGAGCTGGACATGATTCACCAACTTACAAAACAAAGCAGCTGAAAAACAGCCAATTCCGTTCTACTGTCATATTTAATGGGTTGAATTTTGTTGGTCAGCCTTGCAGCAACAAAAAATTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTTCTATGGTTGAAAGGGGATAGCCATTCATCTGATGGTATTGACCATGCATCAGTTCTTTTGAAGAAGAGCAACAATAAAAGTAGGAAGAAATCATTTAGTGGCGCTAAGTGGAGTTGA 3414 0.4262 MPMAYSGIFQGFFRFKTMSRLRCTPLRPYFSSISITPLHRTAIRLRSSSTALKVVNVTRPRTVARQGTVTLPFWHQRSSSYGRFAYQDVSSDDSDVEFASHPSHSQQVGDSTLENIDEWRWKLTMLMRSKDELEVVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVFNFFAISELVVLPFDVHKEVDARLHAHLSQKATASKWSYLNDSLHKSSDNINIPANKGMHEQPEPLTHNSVVKEKILQRRSLQLRHRQQDWQESPEGQKMLKFRRSLPAFKEKDAFLRLISENQFILSGIVNEKMQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKEILPHRPDLRLVLMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTRHRLTPSNQIDDYGQEKTWKMQKQAQAFRRKKSQIASAVEDALEVADFKGYSLRTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSKVLLLACHGSMASSEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQVENAVEYLKIIGALDGNENLTVLGHKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVTPSDKKDLAESAKAQFAAREYSDHLALVRAYEGWKDAETQQAGYEYCWRNFLSSQTLKAIESLRKQFFYLLKDIGLVNDKPETYNAWSHEVHLIRAVICAGLFPGISSVMNKDKSIALKTMEDGQVLLYSSSVNGCVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELANTYLSLKMELEELIQKKLQDPTQETQSHSQLLSAVRLLVSEDHCDGRFVFGRQVLSQVKKETNSKSGVEAENFKNQLQSFLNRAGHDSPTYKTKQLKNSQFRSTVIFNGLNFVGQPCSNKKLAEKSAAAEALLWLKGDSHSSDGIDHASVLLKKSNNKSRKKSFSGAKWS 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04184 1137 CDD DEXHc_RHA-like 326 485 - -
Vian1g04184 1137 PANTHER ATP-DEPENDENT RNA HELICASE 259 700 - -
Vian1g04184 1137 CDD SF2_C_RHA 566 700 - -
Vian1g04184 1137 SUPERFAMILY dsRNA-binding domain-like 1038 1107 - -
Vian1g04184 1137 Gene3D - 1018 1107 - -
Vian1g04184 1137 FunFam DExH-box ATP-dependent RNA helicase DExH3 250 487 - -
Vian1g04184 1137 Pfam Helicase associated domain (HA2) 704 783 IPR007502 GO:0004386
Vian1g04184 1137 Gene3D - 249 487 IPR027417 -
Vian1g04184 1137 Pfam DEAD/DEAH box helicase 326 470 IPR011545 GO:0003676|GO:0005524
Vian1g04184 1137 SMART DRBM_3 1040 1103 IPR014720 -
Vian1g04184 1137 FunFam Putative ATP-dependent RNA helicase DHX36 686 788 - -
Vian1g04184 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 820 IPR027417 -
Vian1g04184 1137 Gene3D - 690 785 - -
Vian1g04184 1137 FunFam DExH-box ATP-dependent RNA helicase DExH3 571 705 - -
Vian1g04184 1137 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 319 486 IPR014001 -
Vian1g04184 1137 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 575 740 IPR001650 -
Vian1g04184 1137 Gene3D - 576 689 IPR027417 -
Vian1g04184 1137 Pfam Helicase conserved C-terminal domain 577 676 IPR001650 -
Vian1g04184 1137 SMART ultradead3 305 500 IPR014001 -
Vian1g04184 1137 Pfam Double-stranded RNA binding motif 1041 1102 IPR014720 -
Vian1g04184 1137 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1039 1104 IPR014720 -
Vian1g04184 1137 SMART ha2_5 703 794 IPR007502 GO:0004386
Vian1g04184 1137 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 860 942 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04184 Vian-Chr1 64844084 64855863 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04184 K14442 - csav:115712582 1191.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04184 1 64844084 64855863 Vian1g04184 1 64844084 64855863 ECH