Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04180 ATGGGAAGCCCTGGATTCGGCAATCAAAATAATGGGCAGCAGCAACGGTTAGGCATAACAGAGCCCATCTCATTGGGTGGACCCACTGAATATGATCTGATCAAGACACGTGAACTTGAGAAGCATTTGCAAGATGCTGGCTTGTATGAGAATCATCAGGAGGCAGTTAGTAGGGAAGAAGTACTTGGCAGGCTAGACCAGATTGTGAAAATTTGGGTCAAAACCGTAAGTCGTGCAAAGGGGCTAAATGAACAACTTGTGCAAGAGGCAAATGCCAATATTTTCACTTTTGGCTCGTATCGACTTGGGGTACATGGTCCTGGAGCAGATGTAGACGTTCTTTGTGTGGGGCCAAGATATGCATCAAGAGATGAAGATTTCTTTGGCGAGCTGCATAAGATGCTATCCGAGATGCCAGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTACCAGTGATGGGGCTCAAGTTCAATGGCGTTTCAATAGATCTTCTTTATGCAAAATTATCTTTGTGGGTCATTCCTGAAAACTTAGATATATCACAGGAGTCAATATTACAAAATGCAGATGAGCAAACTGTCCGCAGTCTTAATGGTTGTAGAGTGACCGATCAAGTCTTGCGTTTGGTTCCAAATATTCAGAATTTTCGAACAACATTGAAGTGCATGAAGTTTTGGGCAAAGCATCGTGGTGTTTATTCGAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCGTTGCTTGTTGCACGAATATGCCAGTTATTTCCAAATGCACTGCCGAATATGTTAGTGTCTCGATTCTTCAGAGTATATACAAAGTGGCGTTGGCCAAATCCAGTAATGCTTTGTGGTATTGAAGAGGGATCACTTGGACTTCAAGTTTGGGATCCCAGAAGATATCCCAAAGATAGATCTCATCTAATGCCAATAATTACTCCTTCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTCAAGTACATTGCGTATTATGATGAAAGAATTTCAGAGGGGAAATGAAATATGTGAGGCTATGGAGGCTAAGAAGGCCGATTGGGACACTCTTTTTGAGCCTTTTCCCTTCTTTGAGGCTTATAAGAATTATTTGCAGATAGAGATATCAGCCGAGAGTGGTGACGATCTTAGAAAATGGAAAGGGTGGGTTGAGTCTCGCCTGCGCCAGTTGACATTGAAAGTGGAGAGGCACACCTATGGCATGCTTCAGTGTCATCCACATCCTGGTGAGTATCCTGACAAATCCAGACCTTTCCACTACTCCTACTTCACGGGACTGCAACGTATGCAAGGTGTTCCTGTCAGTGGTGCTGATGTTTCACAGTTTGATATAAGACTGAGTGTTGAAGAATTTAAGCATTCTGTCAACATGTACACTCTATGGAAACCTGGAATGGATATCCATGTCTTTCATGTGAAACGTCGTAGTATACCAACCTTCGTATTTCCTGGTGGCCTTCGACCTTCACACCCATCTAAACTAGCTTGGGAGAGTAAGCGGGGTTCAGAATTAAGTATTTCTGGCCATGCTCCACCACAACACTCTCAAGAAGGAGCCAACCATGGCAGGAAGAGAAAACTAGCTGAAGATAGTGCGCATAGCTTGAGAAATTCCAAGTCTCTTGCATCTTTGTCTCCCTCCACGAGGGAAGTTCATCCTGTTGTCATTGCTAGTTGTTGCTATGAGAAATGTAATGACTCGGAAATCATTAGTACCAGTGAAGAACAGAGTGAGAAACCTGATTTGGAATCTACAAGGGAATGTCACGGGGATTGGGATGCCAATGGATCGTCTACTTCACAAGATGCTGAAAAGCTAGCTATTGAGAAGATTATGTGTGGTCCAAATGATGCATACCGTGTCTTTTCAGAGGAATCCGATGAGCTTGAGTACAGAAATCAAGTCAAAGATTTTGGTGAGAATATGAAAAACAGCAGCAACTTAGACTCTTCAAACTCACAGGAACCAATTATTCCTCAGAAGGGCACTGCTTCTGCAACTTGTTTAAACTCAAACGGTGGTTCAGAAGACCTCGAGCCGGCGGAGCTGACGGTGCCATTATTTAGTGGGATCACTGCACCTGTGCCACAGCGGAAGCCCCTTATCAGGTTGAAGTTCACCTCCTTAGGAAAAGCTGCTGATTGA 2172 0.4369 MGSPGFGNQNNGQQQRLGITEPISLGGPTEYDLIKTRELEKHLQDAGLYENHQEAVSREEVLGRLDQIVKIWVKTVSRAKGLNEQLVQEANANIFTFGSYRLGVHGPGADVDVLCVGPRYASRDEDFFGELHKMLSEMPEVTELHPVPDAHVPVMGLKFNGVSIDLLYAKLSLWVIPENLDISQESILQNADEQTVRSLNGCRVTDQVLRLVPNIQNFRTTLKCMKFWAKHRGVYSNVTGFLGGINWALLVARICQLFPNALPNMLVSRFFRVYTKWRWPNPVMLCGIEEGSLGLQVWDPRRYPKDRSHLMPIITPSYPCMNSSYNVSSSTLRIMMKEFQRGNEICEAMEAKKADWDTLFEPFPFFEAYKNYLQIEISAESGDDLRKWKGWVESRLRQLTLKVERHTYGMLQCHPHPGEYPDKSRPFHYSYFTGLQRMQGVPVSGADVSQFDIRLSVEEFKHSVNMYTLWKPGMDIHVFHVKRRSIPTFVFPGGLRPSHPSKLAWESKRGSELSISGHAPPQHSQEGANHGRKRKLAEDSAHSLRNSKSLASLSPSTREVHPVVIASCCYEKCNDSEIISTSEEQSEKPDLESTRECHGDWDANGSSTSQDAEKLAIEKIMCGPNDAYRVFSEESDELEYRNQVKDFGENMKNSSNLDSSNSQEPIIPQKGTASATCLNSNGGSEDLEPAELTVPLFSGITAPVPQRKPLIRLKFTSLGKAAD 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04180 723 SUPERFAMILY Nucleotidyltransferase 18 211 IPR043519 -
Vian1g04180 723 Gene3D Poly(A) polymerase predicted RNA binding domain 364 481 - -
Vian1g04180 723 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g04180 723 Pfam Nucleotidyltransferase domain 83 157 IPR002934 GO:0016779
Vian1g04180 723 MobiDBLite consensus disorder prediction 580 599 - -
Vian1g04180 723 FunFam Nuclear poly(A) polymerase 4 364 481 - -
Vian1g04180 723 FunFam Poly(A) polymerase alpha, putative 50 206 - -
Vian1g04180 723 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Vian1g04180 723 Pfam Poly(A) polymerase central domain 18 362 IPR007012 GO:0043631|GO:1990817
Vian1g04180 723 MobiDBLite consensus disorder prediction 580 609 - -
Vian1g04180 723 PANTHER POLY A POLYMERASE 9 535 - -
Vian1g04180 723 MobiDBLite consensus disorder prediction 1 24 - -
Vian1g04180 723 Gene3D - 18 360 - -
Vian1g04180 723 MobiDBLite consensus disorder prediction 501 556 - -
Vian1g04180 723 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
Vian1g04180 723 CDD NT_PAP_TUTase 58 212 - -
Vian1g04180 723 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 491 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vian1g04180 723 MobiDBLite consensus disorder prediction 527 542 - -
Vian1g04180 723 FunFam Putative poly(A) polymerase gamma 179 360 - -
Vian1g04180 723 Pfam Poly(A) polymerase predicted RNA binding domain 365 422 IPR007010 GO:0003723|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04180 Vian-Chr1 64826998 64830879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04180 K14376 - gmx:100816915 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04180 1 64826998 64830879 Vian1g04180 1 64826998 64830879 ECH