Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04096 ATGTTGTCTTCGGAGACCATTAATATCGCTGCAAGTACGCAGAAACTCGATGTTGACAATCGACTTGCTCTGCGATTCTATTACAGAATCGCCGATAATATCCTCAAACAGGCTGATATCTTTCGTGCAGAGAACAATATCGTCGATCTATATGTCATGCTCCTAAGATTTTCTAGTTTGGTCTCTGAGACGATACCACGTCACCGAGATTATAGATCATCTCCACAAATCAAGAAAGAAATTTTGAGAAAGAAATTGTTAAATTCTTTGAATGAGCTGGAGAAATTGAAACCAAAGGTGCAACAGAAGATCAATGAGTTTAATAACAGCAGGCGAGCATACCACCATCACAATGGGCTGAAAAATTGTTATTCAAATAATTTGATGGTTTCTCCAGTGAAAAAGCAATCTTTGGCTAGTTATGGTCGAACAAAGGCAATCGTGCCAACTACAGGAGAGTTTGTTTATCAAGGATCAAGGGGCCAGCAGTTTTCTAGTGTAAGGCCTGTGGAAGAAAATATGAGAAGACTATCTCTAAATCTCCTACGTCCAAAGGAGGAAACTCTCTCCAGACATTCTATTCTAGGTCCCAATGGACTGAAAGGACAGTGGCGACCACCTGCAAGTGATCACGGGGTCAGGTATCCAACCATCATAGATTTGTCTCCAGTTGAAATTCCAAGCCTTCAACAACCCTTGGAAGATGGATCTCTGAGTGAAAAAGATAATACCGTTTCAGAACAACAAAGATCAGACGTAGAATCATTTCTTACCCTGAGTGACAACTTCCAGGAAAAGCTTGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAATCCCTACTCAAATAGAAGTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAGGATTTGATTCCAGTAGTGTCACCTCATGTTATTGAGGAAGGATGTATGAAAGAAATTCCATCATCAGATAGTATTGTTCGTGCTGAGTCTCCTCTGCAACTACACATTTCAACTTCTATGATGAAGAGTTTTATGGAGCTTGCCAAATCAAATACTGACAAAAATTTAGAGACTTGTGGCATTCTTGCAGGTTTGCTTAAAAACAGGAAATTTTATATTACAGCTCTAATAATCCCAAAGCAGGAGGCAACAGCTAGTTCTTGCCAAGCTACAAATGAAGAGGAGATATTTGAAGTACAGGATAAGCAATCTCTTTTCCCCCTAGGATGGATCCACACACATCCCACACAATCTTGTTTCATGTCATCAATTGATGTACATACCCATTACTCGTATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTCATGGCACCAACAGACAGTTCAAGAAGCCATGGCATTTTTCGGTTAACAACCCCAGGTGGAATGTCGGTCATAAGACAATGCCAGCAACGTGGCTTTCATTCACACAATCAGCCTCCTGATGGTGGTCCCATTTACGATACTTGCACAGATGTTTACATGAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA 1533 0.4057 MLSSETINIAASTQKLDVDNRLALRFYYRIADNILKQADIFRAENNIVDLYVMLLRFSSLVSETIPRHRDYRSSPQIKKEILRKKLLNSLNELEKLKPKVQQKINEFNNSRRAYHHHNGLKNCYSNNLMVSPVKKQSLASYGRTKAIVPTTGEFVYQGSRGQQFSSVRPVEENMRRLSLNLLRPKEETLSRHSILGPNGLKGQWRPPASDHGVRYPTIIDLSPVEIPSLQQPLEDGSLSEKDNTVSEQQRSDVESFLTLSDNFQEKLADEAPSLISFEATEIPTQIEVIRQPSPPPVLAEVQDLIPVVSPHVIEEGCMKEIPSSDSIVRAESPLQLHISTSMMKSFMELAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATASSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPTDSSRSHGIFRLTTPGGMSVIRQCQQRGFHSHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04096 510 SUPERFAMILY JAB1/MPN domain 335 466 - -
Vian1g04096 510 PANTHER AMSH-LIKE PROTEASE 3 510 - -
Vian1g04096 510 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian1g04096 510 Coils Coil 83 110 - -
Vian1g04096 510 ProSiteProfiles MPN domain profile. 336 464 IPR037518 -
Vian1g04096 510 FunFam AMSH-like ubiquitin thioesterase 3 3 120 - -
Vian1g04096 510 FunFam AMSH-like ubiquitin thioesterase 3 321 510 - -
Vian1g04096 510 Pfam USP8 dimerisation domain 7 103 IPR015063 -
Vian1g04096 510 SUPERFAMILY USP8 N-terminal domain-like 22 109 - -
Vian1g04096 510 CDD MPN_AMSH_like 335 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vian1g04096 510 Gene3D - 3 120 - -
Vian1g04096 510 Gene3D Cytidine Deaminase, domain 2 321 510 - -
Vian1g04096 510 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 333 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04096 Vian-Chr1 64005845 64012000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04096 K11866 - gmx:100800636 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04096 1 64005845 64012000 Vian1g04096 1 64005845 64012000 ECH