Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04088 ATGAGTAGTACCGGTAGTAAGAAAAAGTTCAATCCTATTCATCTTGAAGATGCTGCAATGGACTTGTTAAACCATGTGGTGAAGGTGAAGGAGAAGATGGGTTTGATTTCACTCCTCCTTCCTCTCATATTCATTGCTTGGGCTATTCACAGATGGCTATTTTCTTTCTCCAATTGGCTTTCCCTTGCTCTTGCTCTGTGGGCATCTATGCAATATGGGAAGTATCAGCGCAAACTGCTGGAGGAAGACTTGAATAAGAAATGGAATCGAATCCTACTCCAAACCTCGCCAGTGACACCATTGGAACACTGCGACTGGTTGAATCTGCTGTTGACACAAATATGGTCCAACTATTTTAACCCCAAGTTCTCAAGAAGGTTATCAGCCATAGTTGAAAAACGTTTAAAGCTTCGAAAACCAAGATTTATAGAAAAAGTTGAGGTGCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCGGGTGATCAGCGAGTCCTGAAATTGAGTTTTGATTGGGACACAAGCGAGATGAGAATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAATCTTCATATAAAGGGTGAGCTTTTGGTGACTCCAATTCTAGATGGAAAGGCACTTTTGTATTCATTTTCGTCCACACCTGAGGTGAGAATAGTAATTGCCTTTGGAAGCGGAGCAAGCCAATCAGCCACTGAGTTGCCTGGGGTTTCTCCATGGCTGGATAAACTTTTTACTGATACGTTGGTTAAAACCATGGTGGAACCTCGACGTCGTTGTTTCAGTTTGCCTGTGGTTAATTTGGGGAAAACTGCTGTTGGAGGCGTTATATACGTGTCAGTGATTTCAGCAGACAAACTTTCTTGGAGTTGTTTCAAGAGTAGCCGATCTTTGAGGCAACAGAATAGCACAATCAATGGATGTTCAGAAAGCAACCTGGATGACAAGGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGTCATGGTTCAAATCCAACGTGGGATACTACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAACCTTTATGAGCGTCCTTCTAGCGGTGTAAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATTGTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAACATGCGAAGTTTTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAAGGTGCCAACTCAGCAGAGTTAAAGGTGAAGATTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCACATAGCTTGAACAACCTCCGTGCTAATTCCCAGCGATCACTTATTGGATCATCAAGTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACAATTGTGGAAGCAAAGGATCTCGTTACGAAAGACAGATCTGGAAAAGTTAGTCCATACGTCAAATTGCAATATGGAAAGGTTGGTAAGAGAACAAAGGTTGCTCCTCCTACTACTACAAATCCTTCCTGGAATGAATCATTTGATTTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTCAGTGAGGAAATTTTTGGAGATGAAAATATTGGTACTGCAAATGTAAATTTGGAAGGACTGGGGGACGGGTCAATCAAGGATGAATGGATCCCACTTGAAGGAGTGAGTTCTGGTGAATTAAGACTTAAAATTGAAGTAGTTAGGGTTGAGGACCAAGAAGGATCAAGGAATTCAGCCAATGGTTGGATAGAACTTGTTGTGATTGAAGCAAGAGACCTTATTGCTGCCGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTGAACTATGGGAACTTGAAGCGGAGGACAAAGGTTATACACAAAACACTCAACCCTCGTTGGAACCAAACCTTAGAGTTCCTTGACGATGGTAGTCCCCTGACACTGCATGTTAGGGACCATAATGCTTTACTACCCACATCAAGTATAGGGGAATGTGTTGTAGAATATCAAAGGTTACCTCCAAACCAGATGTCTGACAAATGGATACCTCTCCAAGGGGTTAAAAGTGGCGAGATACACATCCAAATTACCAGAAAAGTTCCAGAAATGCAAACAAGAAGTTCCCTAGACTCTCAACCATCTTCTTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGTTGAAAAAGTTTCGATCATTAATAGAGGATGGAAATCTTGAAGGACTGACATCAACTTTGAGCGAGTTAGAAAGTCTAGAGGATACAATGGAAGGGTACGTAGCACAGCTGGAGACCGAGCAAATGCTTCTTCTCAGCAAAATAAATGAACTGGGTCAAGAGATCCTCAATTCTTCTTCTTCCCTCTCTAGCAGTCCTTCTCAAAATGGAAATTAA 2487 0.4154 MSSTGSKKKFNPIHLEDAAMDLLNHVVKVKEKMGLISLLLPLIFIAWAIHRWLFSFSNWLSLALALWASMQYGKYQRKLLEEDLNKKWNRILLQTSPVTPLEHCDWLNLLLTQIWSNYFNPKFSRRLSAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGDQRVLKLSFDWDTSEMRILMLAKLSVGTARIVINNLHIKGELLVTPILDGKALLYSFSSTPEVRIVIAFGSGASQSATELPGVSPWLDKLFTDTLVKTMVEPRRRCFSLPVVNLGKTAVGGVIYVSVISADKLSWSCFKSSRSLRQQNSTINGCSESNLDDKDLQTFVEVEVEELTRRTGLSHGSNPTWDTTFNMVLHDNTGIVRFNLYERPSSGVKCDHLASCEIKMRHCEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGANSAELKVKIVVKEWQFSDGSHSLNNLRANSQRSLIGSSSLLSKTGRKLKITIVEAKDLVTKDRSGKVSPYVKLQYGKVGKRTKVAPPTTTNPSWNESFDFDENDGDEYLNVKCFSEEIFGDENIGTANVNLEGLGDGSIKDEWIPLEGVSSGELRLKIEVVRVEDQEGSRNSANGWIELVVIEARDLIAADLRGTSDPYVRVNYGNLKRRTKVIHKTLNPRWNQTLEFLDDGSPLTLHVRDHNALLPTSSIGECVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRSSLDSQPSSLSKSHQIPTQMREMLKKFRSLIEDGNLEGLTSTLSELESLEDTMEGYVAQLETEQMLLLSKINELGQEILNSSSSLSSSPSQNGN 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04088 828 PANTHER OS01G0128800 PROTEIN 15 825 - -
Vian1g04088 828 CDD SMP_SF 123 278 - -
Vian1g04088 828 Pfam C2 domain 486 585 IPR000008 -
Vian1g04088 828 Pfam C2 domain 321 404 IPR000008 -
Vian1g04088 828 Pfam C2 domain 616 712 IPR000008 -
Vian1g04088 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 610 725 IPR035892 -
Vian1g04088 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 485 603 IPR035892 -
Vian1g04088 828 Gene3D C2 domain 602 727 IPR035892 -
Vian1g04088 828 Gene3D C2 domain 476 601 IPR035892 -
Vian1g04088 828 CDD C2 616 712 - -
Vian1g04088 828 ProSiteProfiles C2 domain profile. 465 583 IPR000008 -
Vian1g04088 828 MobiDBLite consensus disorder prediction 730 750 - -
Vian1g04088 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 100 281 IPR031468 GO:0008289
Vian1g04088 828 SMART C2_3c 615 709 IPR000008 -
Vian1g04088 828 SMART C2_3c 486 582 IPR000008 -
Vian1g04088 828 SMART C2_3c 293 411 IPR000008 -
Vian1g04088 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 289 403 IPR035892 -
Vian1g04088 828 CDD C2 487 585 - -
Vian1g04088 828 Coils Coil 780 811 - -
Vian1g04088 828 ProSiteProfiles C2 domain profile. 589 710 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04088 Vian-Chr1 63944265 63950264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04088 487 726 Lipid Metabolism Gene Families AT3G61300 25.818 2.23e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04088 - - ccaj:109803570 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01476 8 34225843 34233190 Vian1g04088 1 63944265 63950264 ECH
Vian1g04088 1 63944265 63950264 Vian1g04088 1 63944265 63950264 ECH
Vian1g04088 1 63944265 63950264 Vian8g01476 8 34225843 34233190 PCT