Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03936 ATGGCTGGCTTGGCAAGCCGTTCTCTGATTGTTCTTGCCATTATATCCTTAGGATGTCTATTTGCAATTTCCATTGCAAAGGAGGAAGCTACCAAGTTGGGGACGGTCATTGGGATTGATCTGGGAACGACCTATTCATGTGTTGGTGTTTATAAGAATGGCCATGTTGAAATCATAGCCAATGACCAAGGTAACCGTATCACTCCATCGTGGGTTGCCTTCACTGACAGTGAGAGACTCATCGGGGAGGCTGCTAAGAATCAGGCAGCTGTCAACCCCGAAAGGACCATCTTCGATGTTAAGAGACTTATTGGAAGAAAGTTTGAAGATAAGGAAGTTCAAAAAGACATGAAGCTCGTTCCTTACAAAATTGTCAACAAGGATGGAAAACCTTACATACAGGTAAAAATCAAGGATGGTGAGACTAAGGTGTTCAGCCCTGAGGAAATCAGTGCCATGATTCTGACTAAGATGAAGGAAACCGCGGAGGCATTCCTTGGGAAGAGAATTAATGATGCCGTGGTCACTGTCCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGACGCTGGTGTCATCGCTGGTCTCAATGTTGCTAGAATTATTAATGAACCCACTGCTGCTGCCATTGCTTATGGATTGGACAAGAAAGGTGGCGAGAAGAACATTCTAGTCTTTGATCTTGGAGGTGGGACATTTGATGTCAGTATCTTGACAATTGATAATGGTGTTTTTGAGGTTCTTGCAACAAATGGAGATACTCATCTTGGAGGTGAGGACTTTGATCAGAGAATAATGGAGTACTTCATTAAATTGGTCAAGAAGAAGCACGGAAAGGATATTAGCAAGGACAACAGAGCACTTGGCAAGCTCAGGAGAGAGGCAGAGCGTGCGAAGAGAGCTCTCAGTAGCCAGCACCAAGTCCGCGTGGAAATTGAATCACTTTTTGATGGTGTTGACTTCTCTGAGCCACTCACCCGAGCTCGGTTTGAGGAGTTGAACAATGACTTGTTCCGGAAGACAATGGGACCAGTGAAGAAGGCTATGGAAGATGCTGGATTACAGAAGAATCAGATCGATGAGATTGTTCTCGTCGGTGGAAGCACAAGGATTCCGAAGGTTCAACAGCTTTTGAAGGATTACTTTGACGGAAAGGAGCCAAACAAGGGTGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGCGGAGAGGGGGGTGAAGAAACCAAAGATATCCTTCTCCTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGGTGGAGTGATGACAAAGTTGATTCCCAGAAACACTGTTATCCCTACAAAGAAATCCCAGGTGTTTACCACCTACCAGGACCAGCAGACCACTGTCTCCATTCAGGTTTTCGAAGGTGAGAGGAGTCTCACAAAGGACTGCCGTCTGCTTGGGAAATTTGATCTGTCAGGAATTCCTCCAGCTCCAAGGGGTACCCCTCAAATTGAAGTGACCTTTGAAGTTGACGCAAATGGCATCCTGAATGTGAAAGCAGAAGACAAAGGCACTGGAAAATCAGAGAAGATCACGATTACAAATGAAAAGGGACGTCTGAGCCAGGAGGAAATCGAGAGAATGGTCCGTGAGGCGGAGGAGTTTGCGGAGGAAGACAAAAAGGTGAAAGAGAGGATTGATGCTCGTAACAGTCTTGAAACCTACGTCTACAACATGAAAAATCAGATCAGCGACAAGGACAAGCTTGCTGACAAGTTGGAGTCAGATGAAAAGGAGAAAATAGAGAGTGCAGTGAAGGAAGCATTGGAATGGCTTGATGACAACCAAAGTGTGGAGAAAGAAGAATATGAGGAGAAGCTTAAGGAGGTGGAAGCCGTTTGCAACCCAATCATCAGTGCTGTCTATCAGAGATCAGGAGGAGCCCCAGGTGGTGATGCATCAGGCGAGGACGAGGACGACTCTCACGACGAGCTCTAG 1998 0.4635 MAGLASRSLIVLAIISLGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKRINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLVKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQISDKDKLADKLESDEKEKIESAVKEALEWLDDNQSVEKEEYEEKLKEVEAVCNPIISAVYQRSGGAPGGDASGEDEDDSHDEL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03936 665 Gene3D - 570 644 IPR029048 -
Vian1g03936 665 ProSitePatterns Heat shock hsp70 proteins family signature 3. 364 378 IPR018181 -
Vian1g03936 665 Gene3D - 219 393 - -
Vian1g03936 665 FunFam Heat shock 70 kDa 415 569 - -
Vian1g03936 665 CDD HSPA5-like_NBD 34 408 IPR042050 -
Vian1g03936 665 ProSitePatterns Heat shock hsp70 proteins family signature 1. 39 46 IPR018181 -
Vian1g03936 665 Coils Coil 545 565 - -
Vian1g03936 665 PANTHER HEAT SHOCK PROTEIN 70KDA 36 607 IPR013126 GO:0005524|GO:0140662
Vian1g03936 665 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 415 569 IPR029047 -
Vian1g03936 665 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 416 573 IPR029047 -
Vian1g03936 665 FunFam Luminal-binding protein 5 569 644 - -
Vian1g03936 665 ProSitePatterns Heat shock hsp70 proteins family signature 2. 227 240 IPR018181 -
Vian1g03936 665 FunFam Heat shock protein ssb1 98 153 - -
Vian1g03936 665 Coils Coil 579 599 - -
Vian1g03936 665 SUPERFAMILY Actin-like ATPase domain 34 218 IPR043129 -
Vian1g03936 665 Pfam Hsp70 protein 36 643 IPR013126 GO:0005524|GO:0140662
Vian1g03936 665 FunFam Heat shock protein 70 37 224 - -
Vian1g03936 665 FunFam Endoplasmic reticulum chaperone BiP 259 342 - -
Vian1g03936 665 Coils Coil 283 303 - -
Vian1g03936 665 MobiDBLite consensus disorder prediction 642 665 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 85 93 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 361 377 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 393 413 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 63 75 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 233 243 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 501 517 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 173 193 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 35 48 - -
Vian1g03936 665 PRINTS 70kDa heat shock protein signature 420 439 - -
Vian1g03936 665 Coils Coil 613 633 - -
Vian1g03936 665 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vian1g03936 665 Gene3D Actin; Chain A, domain 4 259 342 - -
Vian1g03936 665 FunFam Chaperone protein HscA homolog 225 274 - -
Vian1g03936 665 SUPERFAMILY Actin-like ATPase domain 221 412 IPR043129 -
Vian1g03936 665 Gene3D - 37 408 - -
Vian1g03936 665 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 567 650 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03936 Vian-Chr1 62401040 62404362 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03936 10 665 Miscellaneous Gene Families AT5G42020 91.806 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03936 K09490 - gmx:547838 1214.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03936 1 62401040 62404362 Vian1g03936 1 62401040 62404362 ECH