Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03934 ATGGCCATCCTCTCTCAATCCGCTGCTACTTTCTCACCTTCCTTCGTCTCCACTCGCTCCGATTTCACTCGCCTCACTCGCTTCCCCTGCCGCGTCACCTTCCGCCGCGGCCTCGCCGTCTCCTCCTGCTTCAACTCCTCCAAGTCCCCTGGCGCCGGAGGGTTCCTCTCGCCGGACAACGGCGGCGAAGTCTCCTACGAGCTGCACCACGACTTCTCGCCGCAGCGCCGCCGCAGCGGCTCGCCGGTGTTCGTCACTCTGCCGGTGAATTCCGTCAGCCGGGAGGGCGGCCGAGTCTTGAGGCCCAAGACGATGATGTTCTCGCTCAAGGCGCTCGCCACTGCCGGCGTCGAAGGTGTCGTGGTCGAGATTTGGTGGGGCTTGGTTGAGAAGAACAAACCTAGGGTTTACGACTGGAGAGGGTGCGAGGAACTTGTTGCGATGGCATGCAAGTGTGGCCTCAAGGTTCGAGCGGTTCTCGCGTTTCATCAGCATGGCGCGGGACCTGATGATCCCAATTGGATACCGCTTCCTCTATGGGTGCTTGATGAGATAAAGAAAGATGTCGAGTTAGCATATTGTGACCGGTTTGGGAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTTCCTGTGCTGCGTGGGCGTTCTCCTATCCAAGTGTATGCTGATTTTATGAGGGATTTTAGGGACACTTTCAGGTCTTTGCTTGGTGTTATCATTACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCCTTCTCTCCACAAGAGCCGAATTTGGCATGGCCTCAAGAACTTGGAGAATTTCAATGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAATGCGTGAATGGGGAAATGGTGGCCCATTTGGTACTGGAAGTTTGATGCAAAATCCCGAGCATACTGATTTTTTCAAAAATGATGGTGGTTCTTGGGACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAGGTATGTTGCTGCTGCATGGGGAAAGGATTTGTAAGGAAGCTGAAACTATATTTAGGGGTACAGAGGTCCATATGTCAGCAAAATTGGCTGTCATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACAGCTGGCTATTATAATACTTTTAACCGGGATGGATACTTATCCATTGCTCGCATGTTTAGCAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCAGTAATGCAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTCGACAGCTTTTGTTGGCTGCTAGACTCTGTGACCTAGCACTTGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGGATTTACCCAGGTGCTGAAGATGTCAAAATTTTACTCGAATGGGATAGAGAAGCGACCTTTCTCGTTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTAAGACAAATGTCTAATGGAAATATTTTTCGAGCCAGATTATATTCTGTTGGTGACACACGGTTTAAGACCGCACCAGTGATGCCAGAGGCGAGATTGTTGTACCACCTATATCAGTACTCTTGA 1650 0.48 MAILSQSAATFSPSFVSTRSDFTRLTRFPCRVTFRRGLAVSSCFNSSKSPGAGGFLSPDNGGEVSYELHHDFSPQRRRSGSPVFVTLPVNSVSREGGRVLRPKTMMFSLKALATAGVEGVVVEIWWGLVEKNKPRVYDWRGCEELVAMACKCGLKVRAVLAFHQHGAGPDDPNWIPLPLWVLDEIKKDVELAYCDRFGRRNIEYISLGCDILPVLRGRSPIQVYADFMRDFRDTFRSLLGVIITGVQIGMGPGGELRYPSFSPQEPNLAWPQELGEFQCYDKYMLASLNASARNIGMREWGNGGPFGTGSLMQNPEHTDFFKNDGGSWDTPYGKFFLEWYSGMLLLHGERICKEAETIFRGTEVHMSAKLAVIHWHYVTQSHPSELTAGYYNTFNRDGYLSIARMFSKYGFSMCCSCFEMQDAVMQKINPDGSPEGFLRQLLLAARLCDLALEGQNFSTNLDDGGFTQVLKMSKFYSNGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQMSNGNIFRARLYSVGDTRFKTAPVMPEARLLYHLYQYS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 364 380 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 137 155 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 159 180 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 116 130 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 251 273 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 328 347 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 381 392 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 399 422 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 73 514 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 Pfam Glycosyl hydrolase family 14 86 508 IPR001554 GO:0000272|GO:0016161
Vian1g03934 549 SUPERFAMILY (Trans)glycosidases 79 537 IPR017853 -
Vian1g03934 549 Gene3D Glycosidases 73 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03934 Vian-Chr1 62387080 62389575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03934 67 542 Glycoside Hydrolase AT4G17090 47.433 8.77e-150 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03934 K01177 - gmx:100805981 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03934 1 62387080 62389575 Vian1g03934 1 62387080 62389575 ECH