Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03916 ATGTCAATGACTATGAGCTGCTTTTGCTTGAAGAAAGCTAGACCAAAGACTAAGCTAGAACTATCCACCGTTCTTGCTTCGGAAACATCCTATGTCCTTTACCCTTTGACAGTTACTGTGAATGAGATTGAGGCTTTGCTTTGCTCGTTTAAGAAACTAAGTAGTGCAATTGTTGATGATGACTTCCTTCACAAGGAGGAGTTCCATCTTGCACTTTTTAATAATGATAGCAAGCAGAATCTATTTGCAGATAGGGTATTTGATATGTTTGACATCAAGCGTGATGGAGTAATTAGCTTTGGGGAGTTTGTTCGCTCGCTGAGTATCTTTCATCCAAATGCCTCTGAAGAGAAGAAAATTGAATTTGCATTTAGATTGTTTGACCTTACACAGAGTGGATACATTGAGCATCACGAGTTGAAGGAAATGGTGTTGGCTGCTCTCACTGAATCAGATGTTACAGTTCCCGATGATGTTGTTGAAGCAATTGTGTACAGGGTTACAATGCTGGAGGTTGATTCAAAAGGAGATGGTAAGATAGATAACGAAGAGTGGAGAGATTACGTGACACAAAATCCTTCTCTTCTGAAGATCATGACTCTACCCTTTCTAAATGCAATATCAAATTCTCGTTCCCTACCAGAGTATAGAACACAGAAAAAAGTGCAATTGATGGGGTGTTGTTGCTCCAAAGAGCGACTTCATCTTCAAGATCCAGCACTTCTTGCTTCCCAAACCTATTTTAAAATTTCTGAAATTGAAGCATTGCATGTTCTGTTCAAGAAATTAAGCAGCTCGATGGTGGACGACGGGGTTATCAGCAAAGAAGAGTTTCAGCTTGGAATACTTGGAAGCAGCAAGAAACGAAGCTTATTTACTGACAGGTTATTTCAATTATTTGACTCCAAAAGAGATGGGGTGATAGAATTTGGAGTGTTCATTCGAGGTCTAAGTGTCTTCCACCCAGCAGCACCACAAGCACAAAAAGCAGATTTTTCATTTCGACTCTATGATATATGTCAAAAAGGCTTTATTGAACGCGAGGAGGTAAAAGAGATGATATGTGCACTACTGAGTGAGTCAGATCTGGTTCTGTCTAATGACATAATTGAAGTCGTACTTGATAAGACCTTCGAAGAAGCAGACTCAAAAGGAGATGGAAGGATTGATCCAGAGGAGTGGCAAGAATTTGTTGGTCGAAAGCCATCCTTATTGAGGAATATGACTATTCCTTATCTGAAGGATCTTAATACACAGTTTCCTAGCTTTAAACAAACATCAGGCATTGAAGACTATACAAGCAGCTCCTCCCCTGAGAAAAACAGCAGTAGCTCCTTAGAAGGAGAATCTCCACAATACATATATAACACACTGTCTTCTAATGTGAGTTTAGAAGTTGTTCTGTACTTGCAGCCTGGGCTACAAGCTACATGGGTTCCCCGATCAACCAACCAAAAGGAATGA 1464 0.4003 MSMTMSCFCLKKARPKTKLELSTVLASETSYVLYPLTVTVNEIEALLCSFKKLSSAIVDDDFLHKEEFHLALFNNDSKQNLFADRVFDMFDIKRDGVISFGEFVRSLSIFHPNASEEKKIEFAFRLFDLTQSGYIEHHELKEMVLAALTESDVTVPDDVVEAIVYRVTMLEVDSKGDGKIDNEEWRDYVTQNPSLLKIMTLPFLNAISNSRSLPEYRTQKKVQLMGCCCSKERLHLQDPALLASQTYFKISEIEALHVLFKKLSSSMVDDGVISKEEFQLGILGSSKKRSLFTDRLFQLFDSKRDGVIEFGVFIRGLSVFHPAAPQAQKADFSFRLYDICQKGFIEREEVKEMICALLSESDLVLSNDIIEVVLDKTFEEADSKGDGRIDPEEWQEFVGRKPSLLRNMTIPYLKDLNTQFPSFKQTSGIEDYTSSSSPEKNSSSSLEGESPQYIYNTLSSNVSLEVVLYLQPGLQATWVPRSTNQKE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03916 487 CDD EFh 329 398 IPR002048 GO:0005509
Vian1g03916 487 CDD EFh 119 190 IPR002048 GO:0005509
Vian1g03916 487 PRINTS Recoverin family signature 133 151 - -
Vian1g03916 487 PRINTS Recoverin family signature 86 107 - -
Vian1g03916 487 PRINTS Recoverin family signature 180 200 - -
Vian1g03916 487 ProSiteProfiles EF-hand calcium-binding domain profile. 325 360 IPR002048 GO:0005509
Vian1g03916 487 FunFam calcineurin B-like protein 3 31 223 - -
Vian1g03916 487 PANTHER CALCINEURIN B 225 430 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vian1g03916 487 Pfam EF hand 84 105 IPR002048 GO:0005509
Vian1g03916 487 Pfam EF hand 171 186 IPR002048 GO:0005509
Vian1g03916 487 Pfam EF hand 374 398 IPR002048 GO:0005509
Vian1g03916 487 Pfam EF hand 123 144 IPR002048 GO:0005509
Vian1g03916 487 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Vian1g03916 487 ProSiteProfiles EF-hand calcium-binding domain profile. 288 323 IPR002048 GO:0005509
Vian1g03916 487 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Vian1g03916 487 Gene3D - 36 223 - -
Vian1g03916 487 Gene3D - 238 432 - -
Vian1g03916 487 SMART efh_1 373 401 IPR002048 GO:0005509
Vian1g03916 487 SMART efh_1 329 357 IPR002048 GO:0005509
Vian1g03916 487 SMART efh_1 292 320 IPR002048 GO:0005509
Vian1g03916 487 SMART efh_1 119 147 IPR002048 GO:0005509
Vian1g03916 487 SMART efh_1 82 110 IPR002048 GO:0005509
Vian1g03916 487 SMART efh_1 164 192 IPR002048 GO:0005509
Vian1g03916 487 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Vian1g03916 487 FunFam calcineurin B-like protein 3 238 431 - -
Vian1g03916 487 MobiDBLite consensus disorder prediction 427 449 - -
Vian1g03916 487 SUPERFAMILY EF-hand 240 418 IPR011992 -
Vian1g03916 487 ProSiteProfiles EF-hand calcium-binding domain profile. 160 195 IPR002048 GO:0005509
Vian1g03916 487 SUPERFAMILY EF-hand 34 205 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03916 Vian-Chr1 62250905 62258261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03916 236 431 EF-hand Containing Proteins AT4G26570 59.500 1.05e-77 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03916 K06268 - vra:106766823 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03916 1 62250905 62258261 Vian1g03916 1 62250905 62258261 ECH