Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03906 ATGGGGAAAAATTCATGGGCCAAAGTGTCTTTTCGCGATAACCGCAACAGCAAACGGAAGCGCGCTGTACGAAACAAACACCACCTTCTTGGGCTTCGAGCCGCTTTCTGTTTTCATTCCAGCGAGGAAAGTGTCCAACCTCAAAAACCCTTCTCTGGTTTATTTCTTCAAACTCTATTCATAAAAAACTTCTCTTTTAATAATACGTCGTCTACTAATACTCTGGCACTTCTAACCTGGCTGGCACCCGATTGCCGTCCTTTCTTCTTGTTGAGGGTAAATTTAATGGATGATGGTCCCCCGAAACTAAAAATCATCCCTGATCACTTTCAAGTTCCAACAGCAAGTTCAGAATCCCCTGAGAGCAGAACATCATCTATTACAGAGCCTGGAACTGATCAATCATCAAGGTCCTCACGCCATCAACGGACTCGAAGGAAATTAAGGACAGCTTTCATGTTGAACTTGTTTTCTCCTCGGCGACTGTCATGGGGTTCCAGTACTGGAGGTCAGGAAAAGGTTGAGCTAACAGCTGCGGAAGTGGAATCACTTCGAACAGAACTTGCCGATATAGAGGAGAGGGAAGCTCACTTGAAAGCTCAGTTGGAACATATTGATGAAGTTTTGCGGTCTGCTCGTTTATCTGGATATTTATACATTCGAACTGTACTAACTGCCTGCCCTACACCAAGATGGGCAGCACTACCAGGAGAACCTGCACCGATAGATGATACTGAAGTAGATGATCGGCTTCCTCGTTTTGTTGTTCTCCATGGAGCATATCTAAGCCCGCAGGACTCGACTCTTCTATCTGATATCATTGAAGTAGGGAGTTTACCATGTTTTAAGCAAGAAGATGATGAAATTCAGTATGCCTTTTATATTTTAACTCGTCATGGATTGCGATATGAATGCTCAAGCAGTTCTAAGATACAGGTGGACTCTTGGTTATCAGCTTTACAAAGCGAATGCAAATTGGAATGTGATACATTTCCTAAAGCTGACCGCAAACTGGAATCTGATACTTCAGTTCCCAATGAAGGACGTGCGGTTGGGGCTGCTGCTGCTGTTTCATTGAGCAGCAAAGTGCCTCTTTGGTCCTCGAGTCATGGGAGGAGCGGTTCTGGAAGTGGATCCGCGTCATCATGGATTTCGGGAGCCATTGCTCTTCCTGCTGCAGCTTACATGTTCCAAGATCAGGAGGTGCACGCAGCTGAGCTGGAGCGCACTTTCATTGCCATCAAGCCTGATGGAGTTCAGAGAGGGCTGATTTCTGAGATTATATCTCGTTTTGAGCGGAAAGGGTACAAGCTTGTGGGAATTAAAGTAGTGATTCCTTCAAAGGAATTTGCCAAACAGCACTATCACGACCTGAAAGAAAGACCCTTCTTCGATGGGCTGTGTGATTTCCTAAGTTCTGGTCCTGTTATTGCAATGGTGTGGGAAGGACAGGGAGTTATTTCCTATGGCAGAAAGCTAATTGGAGCCACAGATCCCCAGAAATCAGAACCTGGAACAATTAGGGGTGATCTGGCTGTTGTTGTTGGAAGAAATATCATTCATGGGAGTGATGGTCCCGAAACTGCCAAGGATGAGATTAATTTGTGGTTTAAGCCAGAGGAGTTAGTTAGTTTCACTAGCAATGCAGAGAAGTGGGTTTATGGTGCCAATTGA 1674 0.4504 MGKNSWAKVSFRDNRNSKRKRAVRNKHHLLGLRAAFCFHSSEESVQPQKPFSGLFLQTLFIKNFSFNNTSSTNTLALLTWLAPDCRPFFLLRVNLMDDGPPKLKIIPDHFQVPTASSESPESRTSSITEPGTDQSSRSSRHQRTRRKLRTAFMLNLFSPRRLSWGSSTGGQEKVELTAAEVESLRTELADIEEREAHLKAQLEHIDEVLRSARLSGYLYIRTVLTACPTPRWAALPGEPAPIDDTEVDDRLPRFVVLHGAYLSPQDSTLLSDIIEVGSLPCFKQEDDEIQYAFYILTRHGLRYECSSSSKIQVDSWLSALQSECKLECDTFPKADRKLESDTSVPNEGRAVGAAAAVSLSSKVPLWSSSHGRSGSGSGSASSWISGAIALPAAAYMFQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVVIPSKEFAKQHYHDLKERPFFDGLCDFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSFTSNAEKWVYGAN 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03906 557 PRINTS Nucleoside diphosphate kinase signature 518 537 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g03906 557 PRINTS Nucleoside diphosphate kinase signature 410 432 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g03906 557 PRINTS Nucleoside diphosphate kinase signature 495 511 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g03906 557 PRINTS Nucleoside diphosphate kinase signature 454 473 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g03906 557 PRINTS Nucleoside diphosphate kinase signature 474 491 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g03906 557 Gene3D - 403 557 IPR036850 -
Vian1g03906 557 MobiDBLite consensus disorder prediction 112 145 - -
Vian1g03906 557 Pfam Nucleoside diphosphate kinase 408 541 IPR034907 -
Vian1g03906 557 MobiDBLite consensus disorder prediction 112 137 - -
Vian1g03906 557 SUPERFAMILY Nucleoside diphosphate kinase, NDK 407 554 IPR036850 -
Vian1g03906 557 Coils Coil 174 208 - -
Vian1g03906 557 ProSitePatterns Nucleoside diphosphate kinases active site. 518 526 IPR023005 -
Vian1g03906 557 Hamap Nucleoside diphosphate kinase [ndk]. 407 542 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vian1g03906 557 SMART ndk_5 407 544 IPR034907 -
Vian1g03906 557 FunFam Nucleoside diphosphate kinase 403 555 - -
Vian1g03906 557 CDD NDPk_I 408 537 - -
Vian1g03906 557 PANTHER OS05G0595500 PROTEIN 92 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03906 Vian-Chr1 62179158 62188592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03906 - K00940 aprc:113853674 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03906 1 62179158 62188592 Vian1g03906 1 62179158 62188592 ECH
Vian10g00202 10 1775127 1777856 Vian1g03906 1 62179158 62188592 PCT