Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03904 ATGAAGAGGGAAAGCGAGTTGGTTGGACTCTGCATAGAGGCAGCATGTGAGAGCAAAGAAAGCGTTGAAAAATGGCGGATGCAGAGGCGCAGTCTCGATCGCTTACCTTCTCCTGTCGCCGATGCTCTCCTCCGCCGGCTCATCGCCCGTCGTCTCCTCTACCCTTCCCTCCTCGAGGTTTTCAAACACAGCGCCGAAGAGGTTGACGTGAGGGACAACGGCTCCGTGGACGCGGAGTGGATGGCGTATTTGGGAGCTTTTCGTCACTTGCGCTACTTGAATCTCGCGGATTGTCATCGAATCACCACTTCAGCACTTTGGCCAATTACAGGAATGAATACTCTTCAGGAGTTGGATCTGTCTAGGTGCTTCAAGGTTAACGATGCCGGGATTAGCCATCTTCTCTCCGTTCCTAATCTGGAGAAGTTGCGCATTTCAGAAACTGGCGTCACTGCCAAAGGAGTCAAGCTTCTTGCCTCTCTTGAAAACTTGTCTCTTCTCGACTTAGGTGGCTTGCCCGTAGATGACGTGTCGTTAACTTCGTTACAGGTACTGAAAAGGCTACAATATATTGATCTTTGGGGTAGTAAAATATCAAATAAAGGTGCAGCTGTTCTCAATGTGTTCCCAAAGTTGACCTATCTAAATCTTGCTTGGACCAGTGTCACAAAATTGCCCACACTATCATCTCTTGAATGCCTGGACATGAGTAACTGTACTATTGATTCTATACTTGAAGATGATAAATCTCCTTTGGCAAAGCTTATTTTCTCTGGGGCTACATTCCTGAATGAATCTGGAGTCTTCTCGTATGCAAATACAAATCTGGTATCCTTTTTGGATGTAGCCCATACCAGCCTGCATGAATTCTTCTTCTTAAGTAAAATGAAAGTAATAGAACACCTCAATCTCAGCTCATGCATGATGGGGGACGATTCAGTTGAAATGGTTGCATGTGTTGGTGCTAACTTGAAAAGTCTGAATCTAAGTGGTACCAGGGTTAGTTCTGCTGGATTAGGGATTTTAGCTGGACATGTTCCCAACCTTGAAATTCTATCATTATCTCAGACACCATTGGATGACACTGGCATCTCATTTATCAGTATGATGCCTTCATTAAAGGATGTTGACCTGAGCAATACATACATTAAAGGTTTTCTACACCCAGGAAAGATTGATGTGGACTCCCCACTCTCACTGATGGCTTTGCAAAATCTTAAATTAGAAAGGTTGAATTTGGAGCATACGCAAGTTAGGGAAGAAGCATTATACCCCTTGTCAAGCTTCTTAGAGCTGAGATATTTATCACTTAAAAGTGCTTCTCTTGCAGACGTCTCGCTTTACTATTTATCGTCAATTCCAAAATTGACAAATCTTAGTGTTTGTGATGCGGTATTGACAAATTATGGGATTGATATATTTAAGGCTCCTGAAACTCTGAAACTGCTGGACCTCAGAGGTTGTTGGCTCTTAACAGAAGACATTATCTTGTCATTCTGTAGACGTCATCCACAAGTTGAAGTCATACATGAACTTGGTACAGTATATCCTTTTAATAAAAATGGTCCTCATCATTCCTCTCCATCTCGATCAACTTCTAGGACTTTGCAAATGGCTAAGAAGAAAGATCAAGCTCCGGTATTACCGTATCTTGCAGATCAAAGATTAAAGTATAGCAGGGATGAGTTACTTGCATTGCAGTTTGCGTCCTTGCCTCCTGCATCTAGTAGTGAGAGTAGCAATTCAACATTTGAGAAACAATTGGACTGA 1770 0.4294 MKRESELVGLCIEAACESKESVEKWRMQRRSLDRLPSPVADALLRRLIARRLLYPSLLEVFKHSAEEVDVRDNGSVDAEWMAYLGAFRHLRYLNLADCHRITTSALWPITGMNTLQELDLSRCFKVNDAGISHLLSVPNLEKLRISETGVTAKGVKLLASLENLSLLDLGGLPVDDVSLTSLQVLKRLQYIDLWGSKISNKGAAVLNVFPKLTYLNLAWTSVTKLPTLSSLECLDMSNCTIDSILEDDKSPLAKLIFSGATFLNESGVFSYANTNLVSFLDVAHTSLHEFFFLSKMKVIEHLNLSSCMMGDDSVEMVACVGANLKSLNLSGTRVSSAGLGILAGHVPNLEILSLSQTPLDDTGISFISMMPSLKDVDLSNTYIKGFLHPGKIDVDSPLSLMALQNLKLERLNLEHTQVREEALYPLSSFLELRYLSLKSASLADVSLYYLSSIPKLTNLSVCDAVLTNYGIDIFKAPETLKLLDLRGCWLLTEDIILSFCRRHPQVEVIHELGTVYPFNKNGPHHSSPSRSTSRTLQMAKKKDQAPVLPYLADQRLKYSRDELLALQFASLPPASSSESSNSTFEKQLD 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03904 589 SMART LRR_CC_2 115 137 IPR006553 -
Vian1g03904 589 SMART LRR_CC_2 321 345 IPR006553 -
Vian1g03904 589 SMART LRR_CC_2 87 112 IPR006553 -
Vian1g03904 589 SMART LRR_CC_2 429 453 IPR006553 -
Vian1g03904 589 SMART LRR_CC_2 161 185 IPR006553 -
Vian1g03904 589 MobiDBLite consensus disorder prediction 520 539 - -
Vian1g03904 589 Gene3D Ribonuclease Inhibitor 254 385 IPR032675 -
Vian1g03904 589 Gene3D Ribonuclease Inhibitor 152 253 IPR032675 -
Vian1g03904 589 Coils Coil 401 421 - -
Vian1g03904 589 MobiDBLite consensus disorder prediction 520 541 - -
Vian1g03904 589 Gene3D Ribonuclease Inhibitor 16 151 IPR032675 -
Vian1g03904 589 Gene3D Ribonuclease Inhibitor 392 511 IPR032675 -
Vian1g03904 589 PANTHER - 296 420 - -
Vian1g03904 589 Pfam Leucine Rich repeat 113 134 IPR001611 GO:0005515
Vian1g03904 589 Pfam Leucine Rich repeat 88 102 IPR001611 GO:0005515
Vian1g03904 589 SUPERFAMILY RNI-like 347 509 - -
Vian1g03904 589 SUPERFAMILY RNI-like 69 385 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03904 - - gmx:100814174 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03904 1 62161457 62166094 Vian1g03904 1 62161457 62166094 ECH