Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03903 ATGGAGAAGCTTATCTGCATGTTCCTTTTCCTTCTTCTTCTGGTCCCTCCTTTTACTTCTGCTGGCCATGACTATGGTCAAGCTCTCAGCAAGAGCCTTCTCTTCTTTGAAGCTCAGAGATCTGGCTACCTTCCCCACAACCAGAGAGTCTCATGGAGAGCGCATTCTGGTTTGCAAGATGGCAAAGCTAGTGGGGTGGATCTAGTTGGAGGGTACTACGATGCAGGGGACAATGTGAAGTTCGGATTACCCATGGCGTTCACCGTTACGATGATGTCGTGGAGCATAATTGAATACGGCAAACAAATGGCTGCAAGCGGTGAGCTTGGCCACGCCATGGAAGCAGTTAAGTGGGGAACGGACTACTTCATCAAAGCACACCCTCAGGCCAATGTTCTTTATGGAGAGGTGGGAGACGGAAACACTGACCATTACTGCTGGCAAAGGCCAGAGGACATGACAACCGACCGTCACGCTTACAAGATCGATCCAAGCAATCCCGGGTCGGATCTCGCCGGAGAAACCGCGGCCGCTATGGCCGCTGCATCCATTGTTTTCCGACACTCTAACCCTGTTTATTCTCACGAACTTCTAACTCACGCCTATCAGTTGTTCGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACAGTTGCCCAGAAGTATTACAGATCAATCAGTGGCTACAATGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGACCATGACTGAATTTGGTTGGGATGTTAAGTATGCCGGGGTTCAGACATTGGTTGCCAAGTTCTTGTTGCAGGGAAAAGCTGGTCATCATGCTCCAGTTTTCGAGAGATATCAGCAGAAGGCCGAATCTTTCATGTGTTCGTGCCTTGGAAAGGGTTCTCGCAATGTTCAGAAGACTCCTGGTGGCCTCATTTTCCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCGTTTTTAGCCACTGTCTATTCTGACTACCTTGCTTCATCTGGTAGGAACTTGAGATGTAATTCAGGCAATGTTGCCCCTGCTGAACTTCTCTCCCTTGCAAAGTCTCAGGTGGACTACCTTCTTGGAAACAACCCAAGAGCAACTAGTTACATGGTGGGCTATGGAAACAACTTTCCACAAAGGGTTCATCACCGAGGTTCATCCATTGTTTCGATCAAGGTTAACCCTTCATTTGTCAGCTGCCGGGGAGGTTATGATACTTGGTTTAGCAGCAAAAGGAGTGACCCCAACCTACTCACTGGTGCTCTTGTTGGTGGACCTGATGCGTATGATGACTTTGCTGATGAAAGAGATAACTATGAGCAGACAGAGCCAGCAACCTATAACAACGCTCCTCTCATCGGTATTCTAGCACGTCTGAATGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGTTGTTCCCGCTACTAAACCTGTTGTTATCAATCCTCGACCATCCCCCAATACCAAGACAACTCCATCTCCAGCTTCATGGTCAGGCCCAATTTCTATTGAACAGAAAATGACCACCTCATGGGTTGCCAATGGAAAAACTTATTACAGATACTCAACAGTGGTGACAAACAAATCTAACAAGAGTCTCAATTCTCTCAATCTTTCGATCTCCAAGCTTTATGGTCCAATCTGGGGTCTCACAAAGTCTGGTGATTCCTACACATTCCCATCATGGCTCAGCTCACTAGCTGCAGGCAAAAGCCTTGAATTTGTCTACATCCATTCAACTTCTCCAGCAGATGTCTCTGTGGCTAACTACGTGTTGGCCTGA 1869 0.4719 MEKLICMFLFLLLLVPPFTSAGHDYGQALSKSLLFFEAQRSGYLPHNQRVSWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPQANVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRHSNPVYSHELLTHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWTMTEFGWDVKYAGVQTLVAKFLLQGKAGHHAPVFERYQQKAESFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGRNLRCNSGNVAPAELLSLAKSQVDYLLGNNPRATSYMVGYGNNFPQRVHHRGSSIVSIKVNPSFVSCRGGYDTWFSSKRSDPNLLTGALVGGPDAYDDFADERDNYEQTEPATYNNAPLIGILARLNGGHGGYNQLLPVVPATKPVVINPRPSPNTKTTPSPASWSGPISIEQKMTTSWVANGKTYYRYSTVVTNKSNKSLNSLNLSISKLYGPIWGLTKSGDSYTFPSWLSSLAAGKSLEFVYIHSTSPADVSVANYVLA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03903 622 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 386 412 IPR018221 -
Vian1g03903 622 PANTHER ENDO-1,4-BETA-GLUCANASE 8 488 - -
Vian1g03903 622 Gene3D - 22 490 IPR012341 GO:0005975
Vian1g03903 622 Pfam Carbohydrate binding domain CBM49 530 607 IPR019028 GO:0030246
Vian1g03903 622 SUPERFAMILY Six-hairpin glycosidases 23 501 IPR008928 GO:0005975
Vian1g03903 622 SMART CBM49_2 530 610 IPR019028 GO:0030246
Vian1g03903 622 MobiDBLite consensus disorder prediction 509 528 - -
Vian1g03903 622 FunFam Endoglucanase 21 492 - -
Vian1g03903 622 Pfam Glycosyl hydrolase family 9 25 484 IPR001701 GO:0004553|GO:0005975
Vian1g03903 622 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 460 478 IPR033126 -
Vian1g03903 622 MobiDBLite consensus disorder prediction 510 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03903 Vian-Chr1 62155661 62159950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03903 17 622 Glycoside Hydrolase AT1G64390 80.363 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03903 K01179 - gmx:100801949 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03903 1 62155661 62159950 Vian1g03903 1 62155661 62159950 ECH