Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03855 ATGGATGTTTTGTTGTTATTATGTGCTCTTCTGGTTGCTTTGCCAAACGTGGCTGTAGTGGAGAGCCGCAAAGCTCCAGTTTTGGACTACTTTGAGTATTGTGCTATGAGCTGCAGAGCTTATAGTGCCTCATTGGAAGAATTTGGGGGTGTTGGTGATGGAACAACTTTGAACACCGGAGCCTTTCAGGCAGCCATAGATCATCTGAGTCAGTATGCATCAAGTGGAGGGTCTCAACTTTATGTTCCCCCAGGAAGATGGTTAACTGGCAGCTTCAATCTCACTAGCCATTTCACTTTATTCCTACACAAGGATGCCGTGATTCTTGGCTCTCAGGATGAAAATGACTGGCCAGTGATTGATCCCTTGCCATCTTACGGTAGAGGGAGGGACACCCAAGGTGGAAGGTTTAGCAGCCTAATTTTTGGGACCAACCTCACTGATGTAATCATAACTGGGAACAATGGCACATTGGATGGACAAGGAGATCTCTGGTGGCAAAAATTCCACAAGGGGGAGCTCAGTTATACCAGGCCTTACCTGATTGAAATCATGTACTCAGATAATGTTCAGATATCCAATCTCACTCTGGTGAACTCTCCATCGTGGAATGTTCATCCTGTATACAGCAGCAACGTTGTTGTTCAAGGGGTCACAATTCTTGCTCCTGTGACATCTCCAAATACAGATGGAATCAACCCTGACTCTTGCACAAACACAAGAATTGAAGACTGTTATATTGTGTCCGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACAAAGCAGCTTGTAATCAGAAGACTCACTTGTATTTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGTGAGATGTCTGGTGGGATCCAAGATGTGAGGGCTGAGGACATTGTAGCCATCAATTCAGAATCAGGGGTTAGAATCAAAACTGCTGTGGGAAGAGGAGGGTATGTTAAGGACATATTTGTTAGAAGAATGACCATGAACACCATGAAATGGGCATTTTGGATGACAGGAAATTACGGGTCACATGCTGATGACAAGTATGACCCTAATGCACTTCCTGTGATTCAGAACATAAACTATCGTGATATGGTTGCTGAGAATGTCACTATGGCTGCGAGGTTGGAAGGAATCTCTGGTGACCCTTTTACTGGAATCTGCATATCTAATGTAACCATTCAAATGGCAAAGAAGGCTAAAAAAGTTCCATGGACTTGCACTGATATTGATGGGATTTCAAGCGATGTCACTCCTGCACCATGTAATCTGTTGCCAGAACAAGGAGAAGAGAAGATTGGAGCATGTACCTTCCCAGAGGAAAGTTTGCCGATAGAAGATATCCAGGTTCAAACGTGCACTTACAGTAGGAATTTATGA 1410 0.4418 MDVLLLLCALLVALPNVAVVESRKAPVLDYFEYCAMSCRAYSASLEEFGGVGDGTTLNTGAFQAAIDHLSQYASSGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILGSQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGNNGTLDGQGDLWWQKFHKGELSYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVVVQGVTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIFVRRMTMNTMKWAFWMTGNYGSHADDKYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQMAKKAKKVPWTCTDIDGISSDVTPAPCNLLPEQGEEKIGACTFPEESLPIEDIQVQTCTYSRNL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03855 469 SUPERFAMILY Pectin lyase-like 35 437 IPR011050 -
Vian1g03855 469 Gene3D - 33 427 IPR012334 -
Vian1g03855 469 FunFam Glycoside hydrolase family 28 protein 29 426 - -
Vian1g03855 469 Pfam Glycosyl hydrolases family 28 138 412 IPR000743 GO:0004650|GO:0005975
Vian1g03855 469 PANTHER PECTIN LYASE-RELATED 12 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03855 Vian-Chr1 61639361 61641172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03855 31 467 Glycoside Hydrolase AT4G23500 75.515 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03855 - - gmx:100785841 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03855 1 61639361 61641172 Vian1g03855 1 61639361 61641172 ECH