Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03843 ATGTCTTCTCCTAGCAAACGCAGGGACATGGACCTGATGAAACTGATGATGAGGGACTACAAGGTGGAGATGATCAACGATGGCATGCAAGAATTCTTTGTGGAATTCCACGGACCTAAAGATAGTCTGTATGAGGTTGGTGTGTGGAAGGTAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAATAAAATTTTTCATCCTAATGTTGATGAATTGTCTGGTTCTGTATGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTATCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATCCGAGATCATGCTACATATGAACAAAGAGTCAAAGGTGAATATTGTGAGAAATATGCGAAGCCAGAAGACATTGGAGCTGCAGAGGAGAAAGATTCTAGCGAGGATGAGCTGAGTGAAGATGGTTATGCCTCTAGTGATGATGATGGCATTGTCGGGCAACCAGATCCTTAG 558 0.4247 MSSPSKRRDMDLMKLMMRDYKVEMINDGMQEFFVEFHGPKDSLYEVGVWKVRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMIRDHATYEQRVKGEYCEKYAKPEDIGAAEEKDSSEDELSEDGYASSDDDGIVGQPDP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03843 185 MobiDBLite consensus disorder prediction 150 185 - -
Vian1g03843 185 SMART ubc_7 4 149 - -
Vian1g03843 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Vian1g03843 185 Pfam Ubiquitin-conjugating enzyme 11 140 IPR000608 -
Vian1g03843 185 FunFam Ubiquitin-conjugating enzyme 5, E2 1 160 - -
Vian1g03843 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Vian1g03843 185 CDD UBCc 10 140 IPR000608 -
Vian1g03843 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Vian1g03843 185 SUPERFAMILY UBC-like 4 143 IPR016135 -
Vian1g03843 185 MobiDBLite consensus disorder prediction 157 172 - -
Vian1g03843 185 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03843 Vian-Chr1 61482429 61484938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03843 K10576 - gmx:100791133 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03843 1 61482429 61484938 Vian1g03843 1 61482429 61484938 ECH