Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03836 ATGTGGTTTCTCGGTTGGAAAGGGGCGTCGGGGTTCTCAGCCTCTTCCACAGCCGAACAAGTCACTCAAGGGATTGATGGAACCGCTCTCACCGCCATTGTCACAGGAGCATCAAGTGGTCTTGGCCTGGAGACCACCCGGGTTCTTGCATCCCGTGGTGTCCATGTTGTCATGGCAGTAAGGAATGTGGAAAGTGGTAAGAATGTCAAAGAAACTGTTCTTGAGGAAATTCCCTCGGCTAAAATTGATGTTATGGAGTTAGATCTAAGCTCTATGGCATCTGTAAGGAAATTTGCAGCAGATTTTAACTCATCTGGTCTTTCACTCAATATTCTAATTAACAATGCAGGGGTGATGGCAACTCCATTCTTGCTTTCCCAAGACAATATTGAATTGCAGTTTGCAACCAATCATTTAGGTCATTTTCTCTTGACAAACCTTTTATTAGAAACAATGAAAAAAACAGTACGAGATTGCAAACAGGAAGGAAGGATAGTTATTATATCATCAGAGGCACACAGATTTGCATACCGTGAAGGAATTTTGTTTGATAAGATCAATGATGAATCAGGGTACAACAGTTATTTTTCTTATGGACAATCAAAACTTGCTAACATTCTGCATGCAAAGGAGCTTGCAAGGCGCTTGAAGGAAGAAGGAGTGGAAATAACTGTCAACTCCCTTCATCCTGGATCAATTGTTACAAATATTTTGCGATACCATGGTTATGTTAATGCCCTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTTCAACAGGGAGCTGCAACTCAGTGTTACGTGGCGTTGCATCCACAAGTGAAGGGAGTATCTGGTGAATACTTTATGGATTGCAATAAGGCCGACCCAACCTCTCTGGCTAAAGATTCAGAGCTGGCAAAAAAACTATGGGAATTCAGCTCAAGTCTGACTAATCCAAAGTAG 948 0.4198 MWFLGWKGASGFSASSTAEQVTQGIDGTALTAIVTGASSGLGLETTRVLASRGVHVVMAVRNVESGKNVKETVLEEIPSAKIDVMELDLSSMASVRKFAADFNSSGLSLNILINNAGVMATPFLLSQDNIELQFATNHLGHFLLTNLLLETMKKTVRDCKQEGRIVIISSEAHRFAYREGILFDKINDESGYNSYFSYGQSKLANILHAKELARRLKEEGVEITVNSLHPGSIVTNILRYHGYVNALANMVGKYFLKNVQQGAATQCYVALHPQVKGVSGEYFMDCNKADPTSLAKDSELAKKLWEFSSSLTNPK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03836 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 288 IPR036291 -
Vian1g03836 315 Pfam short chain dehydrogenase 31 177 IPR002347 -
Vian1g03836 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Vian1g03836 315 PANTHER RETINOL DEHYDROGENASE 10 312 - -
Vian1g03836 315 Gene3D - 25 315 - -
Vian1g03836 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vian1g03836 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vian1g03836 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vian1g03836 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Vian1g03836 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03836 Vian-Chr1 61379641 61382369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03836 33 231 Acyl Lipid Metabolism Gene Families AT1G62610 29.524 1.12e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03836 - K19329 gmx:100793781 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03836 1 61379641 61382369 Vian1g03836 1 61379641 61382369 ECH