Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03833 ATGGCGTTATCATTTCTTCGTGTTTCGCACTTGCTTTCTCCAACTCCTACACCTGCAACTGCAACTGCAACTACTACTACATCCACTGTCGTGAAGTTCCAACACTTTCGTAGACCTTCTGACTTCACACTCTTCTTTCGCTCTTCAATTTTGTGTCCATTGGTTAGGGCCATTGGGCCTGATGGGAGGTTCTACCCAAGCCCAGGTGACGACGACCCACCGGAGGCTGCCGAGGACTCCTCCCATGGCTTCTCCACCTTCCAACAAATTCAGCAGCAAGCGGAACGCGCGCGCCAGATCGAAGAGGAAGACTACAAGAACAACCAGGCCACGTACCTCGCCGCCATCGCCGACGTCGAAGACGCCCCCGATAACGTCGACTTCGACACCTCTGGCGACGACCTCTTCGGGGATATCGACAAAGCCATCGCGCTCAAGCGTAAGGAGTTCGTCTCCCAAGGCCTTCTCGAGCCGAATCCCCCCAAACAGGACCAGCTGGCCGCTGCAGCCGCCGTGGATGAACTTCAGGCGGATGAGCTCGGCGATTTGGAGGAAATTGAACGGCTCCAGGGACTCACCGGTAATGGTAATGGTAACGGAAGCTTGAGTGAATCTCCGTTTGAATTGGATTTTGACAGTTACGGGAAAAGCAAGGTTAGAATTGTAGACGGAAAGTTCAAGATGAGTTTGGCGGAGCTTTTAGATGAGAGTAAGGTCGTGCCGGTGTCGGTTTCCGGTGATTTAGAAGTCGAAATCACCGGAATTCAGCACGATTCGCGGATTGTTAATTCCGGCGATTTGTTTGTGTGTTGCGTTGGGCGTAAAACCGACGGACATTTGTTTCTTTCCGAGGCTGATAAGAGAGGTGCGGTTGCGGTTGTGGCTAGTAAAGAGGTTGATATTGAGGATACTTTGGGGTGTAAGGCTTTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTGCTCTGGCTGCGTCGTTTTATAAACATCCTTCCACTAAAATGGCCGTGATTGGGATAACTGGGACTTATGGAAAAACGACCGCCACTTGTTTGATTAAAAGTTTGTATGAATCCATGGGACTACGCACTGGGATGTTGAACTCGGTTGCCTCTTTTGTCCACGGGGATAATAAGTTGGAGTTAGGTAGCGCGGCGTTGGATGCTGTTTTGGTTCAGAATTTGATGGCGAAGATGATTCACAACGGGACTGAGGCGGTGGTCATGGAGGCAGGTTCTCATGGCCTGGAGGAGGGAAAGTATGATGAGGTTGATTTTGATATCGCTGTTTTCACAAACTTGAGTCAGGACAAGGAGGGCGACAGAAATGCGCAGGCTAAGTTATTCTCGAGAATGGTGGATCCTGAGAGGCATAGGAAGGTTGTTAACATTGATGATCTGAACGCGCCCTTTTTTGTGTCGCAGGGGAGCCAGGAGGTTCCTGTTGTGACGTTTGCGATGGAGAATAAGGATGCTGATGTGCATCCATTGAAGTTTGAACTTTCTCTGTTTGAGACTCAGGTGTTGGTTAATACTCCCACAGGGATACTGGAGATTTCTTCAGGTTTGCTTGGGAAGCATAATATTTACAACATTCTTGCAGCTGTAGCGGTTGGGATTGCTGTTGGGGCGCCCTTAGAGGACATTGTTAGAGGAATTGAAGAGGTCGATGCGGTTCCTGGGAGGTGTGAATTGATTGATGAGGAACAGGCCTTTGGGGTGATAGTTGACCATGCCAGTACTCCTGATTCATTGTCTAGATTGCTTGATTCTGTAAGAGAGCTAGGACCTCGCAGGATCATAACGGTCATTGGATGCCGTGGTGAGGGTGACAGGGGTAAGAGACCTGCGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTCACATCTGACAATCCCAAAAATGAAGACCCTTTGGATATATTGGATGATATGCTATCTGGGGTAGGATGGTCTATGCAAGACTACCTCAAATATGGAGAAAATGACTATTATCCACCTCTTCCAAATGGTCATAGACTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCCGCGGTTGCAATGGGAGAGGAGGGCGATGTGGTTGTGGTTACTGGCAAAGGCCATGAAGCATATCAAATAGAAGGTGATAAGAAGGAGTTTTTTGACGATCGAGAAGAGTGCCGAGAGGCATTGCAATATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTTACCAGAGAGCCATTGATAATGGGTTGTTTTCTGACTGCAATTCTAGCAAGTTTGCAGAAAAGGGCAAAAAGCTGGAAAGCACAAGCCCGAAATAA 2328 0.4832 MALSFLRVSHLLSPTPTPATATATTTTSTVVKFQHFRRPSDFTLFFRSSILCPLVRAIGPDGRFYPSPGDDDPPEAAEDSSHGFSTFQQIQQQAERARQIEEEDYKNNQATYLAAIADVEDAPDNVDFDTSGDDLFGDIDKAIALKRKEFVSQGLLEPNPPKQDQLAAAAAVDELQADELGDLEEIERLQGLTGNGNGNGSLSESPFELDFDSYGKSKVRIVDGKFKMSLAELLDESKVVPVSVSGDLEVEITGIQHDSRIVNSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEVDIEDTLGCKALVIVEDTNAVLPALAASFYKHPSTKMAVIGITGTYGKTTATCLIKSLYESMGLRTGMLNSVASFVHGDNKLELGSAALDAVLVQNLMAKMIHNGTEAVVMEAGSHGLEEGKYDEVDFDIAVFTNLSQDKEGDRNAQAKLFSRMVDPERHRKVVNIDDLNAPFFVSQGSQEVPVVTFAMENKDADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDHASTPDSLSRLLDSVRELGPRRIITVIGCRGEGDRGKRPAMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLSGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVTGKGHEAYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSYQRAIDNGLFSDCNSSKFAEKGKKLESTSPK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03833 775 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 564 737 - -
Vian1g03833 775 Pfam Mur ligase family, glutamate ligase domain 559 642 IPR004101 GO:0009058|GO:0016881
Vian1g03833 775 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 228 730 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Vian1g03833 775 SUPERFAMILY MurE/MurF N-terminal domain 228 331 IPR035911 -
Vian1g03833 775 Pfam Mur ligase family, catalytic domain 251 328 IPR000713 GO:0009058|GO:0016881
Vian1g03833 775 Gene3D - 229 329 - -
Vian1g03833 775 PANTHER MUR LIGASE FAMILY MEMBER 183 740 - -
Vian1g03833 775 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 559 731 IPR036615 GO:0009058|GO:0016881
Vian1g03833 775 MobiDBLite consensus disorder prediction 63 85 - -
Vian1g03833 775 SUPERFAMILY MurD-like peptide ligases, catalytic domain 331 556 IPR036565 GO:0005524|GO:0009058
Vian1g03833 775 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 250 731 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Vian1g03833 775 Gene3D - 331 562 IPR036565 GO:0005524|GO:0009058
Vian1g03833 775 Pfam Mur ligase middle domain 340 538 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vian1g03833 775 Gene3D - 565 742 IPR036615 GO:0009058|GO:0016881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03833 - - vum:124830567 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03833 1 61363217 61366925 Vian1g03833 1 61363217 61366925 ECH