Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03823 ATGGCAGTCGTTTCGCGAACTACCACCACCTACTCCTACAGCCACTTATCCCGACGACACTTCGATAGGGAAACCAAAGCCTCTGCTGCCAACACTTTGTCATGCTCTGCCTGGGTTTCTGCTAAGAAGCCTTCTCCGACGCAGAGGATTGCCACACGTGGGGGAAGAGTGATTGTTGCTGCTAGCCCTCCCACTGAAGATGCCGTGGTTGTCACGGACCCACTCACCAAGCAGGATCTTGTGGACTATCTTGCCTCGGGTTGCAAGCCCAGGGAAAAATGGAGAATAGGTACTGAACACGAGAAGTTTGGTTTTGAGTTTGGAAGTTTGCGTCCTATGAAGTATGAGCAAATAGCAGAATTATTGAATGGAATCGCTGAGAGATTTGACTGGGATAAAATAATGGAAGGTGATAAAATTATTGGACTCAAACAGGGAAAGCAGAGCATATCATTGGAGCCCGGTGGTCAGTTTGAACTTAGTGGAGCCCCCCTTGAAACCTTGCACCAGACTTGTGCTGAAGTTAATTCCCACCTTTATCAGGTTAAAGCTGTAGCTGAGGAAATGGGAATTGGATTTTTGGGAATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTGTAATGCCAAAGGGAAGATATGATATTATGAGGAATTACATGCCTAAAGTTGGTTCTCTGGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTTAGTTCAGAAGCAGACATGATCAGGAAATTTCGTGCTGGCCTTGCTCTACAGCCTATAGCAACGGCTCTTTTTGCGAATTCACCTTTTAAAGAGGGAAAGCCAAATGGTTTTGTCAGCATGAGAAGCCATATTTGGACCGATACTGACAAGGACCGCACAGGCATGCTGCCTTTTGTCTTTGATGATTCTTTTGGGTTTGAGCAGTATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTACCGGAAACACAGATATATTGATTGTACTGGAAAGACCTTCAGGGACTTCTTGGATGGAAGACTTCCTTGTATTCCTGGGGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGCCCTTGGAGAAGGTTATGTGCATTACCAGCACTTTGGGTAGGGTTATTGTACGATGATGCTTCTCTACAAAGTGTTTTAGATTTGACAGCTGATTGGACCCCAGAAGAAAGACTGATGTTAAGGAATAAGGTTCCCGTAACTGGTCTAAAAACACCATTCCGAGATGGTTTGCTGAAGCATGTTGCGGAAGATGTTCTACAGTTGGCAAAGGATGGCTTGGAGAGAAGAGGCTTCAAGGAATCGGGATTTTTGAATGAGGTAGCCGAGGTGGTTAGAACAGGCGTCACTCCAGCTGAGAGGCTTTTGGAATTGTATCATGGAAAGTGGGAGCAATCCGTAGATCATGTGTTTGAGGAATTGCTTTATTAA 1527 0.4492 MAVVSRTTTTYSYSHLSRRHFDRETKASAANTLSCSAWVSAKKPSPTQRIATRGGRVIVAASPPTEDAVVVTDPLTKQDLVDYLASGCKPREKWRIGTEHEKFGFEFGSLRPMKYEQIAELLNGIAERFDWDKIMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGIKDIPVMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFKEGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKHRYIDCTGKTFRDFLDGRLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPALWVGLLYDDASLQSVLDLTADWTPEERLMLRNKVPVTGLKTPFRDGLLKHVAEDVLQLAKDGLERRGFKESGFLNEVAEVVRTGVTPAERLLELYHGKWEQSVDHVFEELLY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03823 508 SUPERFAMILY Glutamine synthetase/guanido kinase 86 506 IPR014746 GO:0003824
Vian1g03823 508 NCBIfam glutamate--cysteine ligase 74 508 IPR011556 GO:0004357|GO:0006750
Vian1g03823 508 Gene3D - 60 508 - -
Vian1g03823 508 FunFam Glutamate--cysteine ligase 60 508 - -
Vian1g03823 508 PIRSF GCL 58 508 IPR035434 GO:0004357|GO:0006750
Vian1g03823 508 Pfam Glutamate-cysteine ligase family 2(GCS2) 126 414 IPR006336 GO:0004357|GO:0042398
Vian1g03823 508 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 49 508 IPR035434 GO:0004357|GO:0006750
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03823 Vian-Chr1 61269339 61276500 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03823 K01919 - gmx:547545 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03823 1 61269339 61276500 Vian1g03823 1 61269339 61276500 ECH