Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03822 ATGAGAGAAATCCTCCATGTTCAAGCTGGCCAATGTGGCAACCAAATCGGAGGCAAGTTTTGGGAGGTGATGTGTGATGAACATGGCATAGATGCCACTGGAAATTACATAGGGGACTCTCATCTTCAACTTGAGAGGGTTAACGTCTACTACAATGAAGCAAGTGGAGGACGCTATGTTCCTCGAGCCGTGCTTATGGACCTTGAACCGGGCACCATGGACAGCTTGCGATCTGGTCCTTATGGGAAAATTTTCAGGCCTGATAACTTTGTCTTTGGTCAAAACGGAGCTGGAAACAACTGGGCCAAGGGGCATTACACTGAGGGAGCAGAGCTTATTGATTCTGTTCTTGATGTTGTTCGTAAAGAAGCTGAGAACTGTGACTGCTTGCAGGGGTTTCAAATTTGTCACTCACTGGGAGGTGGAACTGGGTCTGGAATGGGTACTTTACTGATCTCAAAGATCAGAGAAGAGTATCCAGATAGGATGATGTTGACATTCTCAGTGTTCCCTTCTCCTAAGGTCTCTGACACAGTGGTTGAACCCTACAATGCCACTCTCTCTGTTCACCAACTGGTTGAGAATGCAGATGAATGCATGGTCCTTGACAATGAAGCACTCTATGATATCTGTTTCCGAACACTAAAGCTCACAAATCCAAGTTGTAACGTGTGCGACATTCCCCCCACCGGCCTCTCCATGTCCTCCACCTTCATGGGCAACTCCACCTCCATCCAGGAGATGTTCCGGCGCGTCTCCGATCAGTTCACCGTCATGTTCAAGAGAAAGGCTTTCTTGCATTGGTACACCGCGGAGGGCATGGACGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAACGACTTGGTGGCTGAGTACCAGCAGTATCAAGACGCTGCCGCCATGGAAGAGGGAGAGGTTGACGAGGACGAAGAAGATGACCTGGCTGCATGA 954 0.4906 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYIGDSHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSCNVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSDQFTVMFKRKAFLHWYTAEGMDEMEFTEAESNMNDLVAEYQQYQDAAAMEEGEVDEDEEDDLAA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03822 317 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vian1g03822 317 FunFam Tubulin beta chain 245 316 - -
Vian1g03822 317 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 224 IPR036525 -
Vian1g03822 317 PANTHER TUBULIN 3 222 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 SMART Tubulin_4 47 243 IPR003008 GO:0005525
Vian1g03822 317 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vian1g03822 317 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vian1g03822 317 Gene3D Tubulin/FtsZ, GTPase domain 1 291 IPR036525 -
Vian1g03822 317 SUPERFAMILY Tubulin C-terminal domain-like 212 297 IPR008280 -
Vian1g03822 317 CDD beta_tubulin 2 297 - -
Vian1g03822 317 Coils Coil 279 313 - -
Vian1g03822 317 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vian1g03822 317 FunFam Tubulin beta chain 1 287 - -
Vian1g03822 317 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03822 Vian-Chr1 61264817 61266879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03822 K07375 - oeu:111365274 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03822 1 61264817 61266879 Vian1g03822 1 61264817 61266879 ECH