Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03785 ATGGTTTTCATTCATGGAATGTTGAACATTCTCGTTCCCCCTCTAAGCCTGGCTATTCTACTGCTTATTTTACCACCATTTTTGTTATTCAAGATTCTCCGCTTCATCGTAAGATCAATTTTTAAAGAGAATGTAGCAGGAAAAGTGGTACTTATCACTGGGGCATCCTCGGGCATAGGCGAGCACCTAGCATATGAGTATGCCAAAAGAGGGGCGTGTCTAGCACTTGTTGCCAGAAGAGAAAATCAAATCAAAGAGGTTGCTAGCAATGCCAAATTGCTTGGATCCCCTGATGTGATCACCATTACTGCTGATGTTTCAAGACCTCAAGATTGTCGACGATTCGTTGAGTCAACAATCAACCACTTTGGACGATTGGATCATTTGGTGAACAATGCCGGAATAAATGCTCTCAGCATGTTTGAGGACACCGCTGATATCACAAACTTTGCACCAGTAATGGACATTAACTTCTGGGGTTCTGCATATAGCACTTACTTTTCAATCCCTCACCTCAGACAAAGCAAAGGAAAGATCGTAGCAGTAGCTTCTTATACTGGATGGATGCCTGTTCCGATGATGAGTATTTACAATGCCAGCAAAGCAGCAGTGATCAGCCTATATGAGACTCTGAGAACTGAATTGGGAAGAGACGTAGGAATAACTATAGTCACTCCAGTGTTGATAGAGTCAGAAATGTCTCAAGGGAAGATCCTATCCAAGGATGGCAAGATGGTTTTTGATCAACAAATAAGAAATATGAAAGTTGGTGTGATGCCCATAAAATCAGTGACAGAAGCTGCCAAAGCAATTGTGAATAGCGTTTGCCGTGGGGACTCGTATTTGACCGAACCAGCTTGGTTTACGACAACGTTCTATTGGCAGATATTTTTCCCTGAAGTGTTAGGGTTTTTTAACCGCCGGTCACTCACTTCGGAGTCTTCGGTGGAGGATCCATCTAGCAGCAAGAAGGTCCTTGATCTTAAACTCTTACAGAAATATATAAATCCTAAGTCAGTGAGAAGTCCCAATATCAAACCCAACTAA 1047 0.4231 MVFIHGMLNILVPPLSLAILLLILPPFLLFKILRFIVRSIFKENVAGKVVLITGASSGIGEHLAYEYAKRGACLALVARRENQIKEVASNAKLLGSPDVITITADVSRPQDCRRFVESTINHFGRLDHLVNNAGINALSMFEDTADITNFAPVMDINFWGSAYSTYFSIPHLRQSKGKIVAVASYTGWMPVPMMSIYNASKAAVISLYETLRTELGRDVGITIVTPVLIESEMSQGKILSKDGKMVFDQQIRNMKVGVMPIKSVTEAAKAIVNSVCRGDSYLTEPAWFTTTFYWQIFFPEVLGFFNRRSLTSESSVEDPSSSKKVLDLKLLQKYINPKSVRSPNIKPN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03785 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vian1g03785 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vian1g03785 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Vian1g03785 348 Gene3D - 35 317 - -
Vian1g03785 348 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Vian1g03785 348 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Vian1g03785 348 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vian1g03785 348 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Vian1g03785 348 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vian1g03785 348 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Vian1g03785 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 306 IPR036291 -
Vian1g03785 348 PANTHER RETINOL DEHYDROGENASE-RELATED 46 309 - -
Vian1g03785 348 Pfam short chain dehydrogenase 48 236 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03785 Vian-Chr1 60833537 60836225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03785 39 266 Acyl Lipid Metabolism Gene Families AT3G12800 31.148 9.31e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03785 K22418 - gmx:100787835 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03785 1 60833537 60836225 Vian1g03785 1 60833537 60836225 ECH