Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03778 ATGCCGGAAGAGGATTTGGTTGACATCAAGTTTAGGTTGTACGATGGCTCCGATATCGGACCCTTCAGGTACTCATCCGCCGCCACTGTCGATATGCTTAAGCAGAGGATTGTCTCCGATTGGCCCAAAGGTAAAACGATCGTACCAAAGTCAGCTAATGAAGTGAAATTGATTAATTCTGGTCAAATCTTGGAAAACAACAAGACTGTTGGTCAATGTAAAGTACTATTTGGTGAGATTGCAGGAAGTATTATAATAATGCATGTTGTTGTACAGCCATCTCTCGCAAAAACTAAAGCTGATTGTCGAAGCGAATATTTCCATCGAACAAGATAA 336 0.4107 MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTIVPKSANEVKLINSGQILENNKTVGQCKVLFGEIAGSIIIMHVVVQPSLAKTKADCRSEYFHRTR 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03778 111 CDD Ubl_MUBs_plant 6 93 - -
Vian1g03778 111 PIRSF MUB 1 109 IPR017000 -
Vian1g03778 111 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Vian1g03778 111 Gene3D - 1 100 - -
Vian1g03778 111 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 100 IPR040015 -
Vian1g03778 111 SUPERFAMILY Ubiquitin-like 2 97 IPR029071 -
Vian1g03778 111 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 101 IPR039540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03778 Vian-Chr1 60735565 60738225 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03778 - - vra:106768304 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03778 1 60735565 60738225 Vian1g03778 1 60735565 60738225 ECH