Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03748 ATGGAAGCCATGAACGTGACGAGGGTTAGAGAAGAAGTGCGTGTTGAAGATGATTGCACTGAAACTGAACTCAACAAAATCCGTCTCTTGAGGGCAATGGTTGAAGCACGAGATCCCTCTGCTAAGGAAGAAGATGATTTTACGATTAGAAGATTCCTACGTGCTCGTGATTTAGATTTGGAGAAGGCTTCTACAATGTTCCTCAAGTACTTGAAATGGAGACATTCCTTTGTTCCAAATGGTTCTGTATCCGTATCAGAAGTTCGCAATGAACTTGCTCAAGAGAAGGTGTTCGTGCAAGGACATGACAAGATAGGTCGACCTATAGCTGTTGTAATCGGTAGAAAACATTTTCAGAACAAAGATGGTGGAGATGAATTCAAACGGTTTGTCGTCTACGTGTTTGACAAAATATGTGCAAGTATTCCACCTGGTCAAGAAAAGTTTGCTGCTATAGCTGAACTTAAGGGATGGGGATACTCAAACAGTGACGTTCGTGGATATCTTGGTGCTCTATCAGTTTTGCAGGATTACTACCCGGAAAGATTGGGGAAGTTGTTTATTGTCAATGCACCATACATATTTATGAAAGTGTGGCAAATTATTTACCCTTTCATTGACAACAAAACCAAGAAGAAGATTGTATTTGTGGATAAAAATAAGGTGAAATCAACACTGCTAGAAGACATTGATGAAAGTAATATACCAGAGATATTCGGTGGGCCACTGCCATTAGTCCGACTTCAGGATATCTAA 756 0.4021 MEAMNVTRVREEVRVEDDCTETELNKIRLLRAMVEARDPSAKEEDDFTIRRFLRARDLDLEKASTMFLKYLKWRHSFVPNGSVSVSEVRNELAQEKVFVQGHDKIGRPIAVVIGRKHFQNKDGGDEFKRFVVYVFDKICASIPPGQEKFAAIAELKGWGYSNSDVRGYLGALSVLQDYYPERLGKLFIVNAPYIFMKVWQIIYPFIDNKTKKKIVFVDKNKVKSTLLEDIDESNIPEIFGGPLPLVRLQDI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03748 251 Pfam CRAL/TRIO domain 95 241 IPR001251 -
Vian1g03748 251 SMART sec14_4 91 244 IPR001251 -
Vian1g03748 251 SUPERFAMILY CRAL/TRIO N-terminal domain 17 80 IPR036273 -
Vian1g03748 251 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 85 247 IPR001251 -
Vian1g03748 251 SUPERFAMILY CRAL/TRIO domain 87 244 IPR036865 -
Vian1g03748 251 CDD SEC14 97 241 IPR001251 -
Vian1g03748 251 PANTHER OS03G0850700 PROTEIN 17 250 - -
Vian1g03748 251 Gene3D - 15 248 IPR036865 -
Vian1g03748 251 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03748 Vian-Chr1 60348474 60352701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03748 51 237 Acyl Lipid Metabolism Gene Families AT1G55840 28.708 3.23e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03748 - - gmx:548015 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03748 1 60348474 60352701 Vian1g03748 1 60348474 60352701 ECH