Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03680 ATGGGAAATGCAGAGTCAAGTGATTCTCATGCTGATTTTCACCAGCGACCCCGGTCCTCTGAAGGAAGTTCAGCAAATACTAGCTACCAATATCATCAACCCCCTTCCTTCGTTGGAAGTTCAGCAAGTGCTAGTCATCAATATCATGACCACCCTTCCTATGATGAAAGTTCAATGAATACTAGCTATCAATATCATCAACCGGTTCAACCCTCTTTATATGCTGGGAGTTTGGTGAATACCAAACATCACCATAAGCAGCGACCCACATATATACCTGACAATTTCAGTTCATTGGATCAGGTTGTTTCCGCTTTGAGAGAAGCTGGTTTGGAGTCTTCGAATCTTATAATTGGTATTGACTTCACCAAAAGCAATGAGTGGACAGGAAAATATTCTTTCAACCATAAAAGCCTTCATTATATTGGAAACACTCCTAATCCATATGAGCAAGCGATCTCTATTATTGGCCGTACTCTCTCTTCGTTTGATGAAGACAATCTGATCCCATGTTTTGGATTTGGTGATGCATATACACATGATCAGAATGTGTTCAGCTTTTATCCCGATGATCGCTATTGTCACGGTTTTGAGGAAGTACTTGCACGCTACCGAGAGATTGTGCCACACTTAAAATTGGCAGGTCCAACATCATTTGCCCCTGTAATCGATGCAGCAGTTGATATTGTGGAAAGAAGCAATGGTCAATACCATGTTCTTGTCCTTATTGCTGATGGACAGGTTACCAGAAATTCAGGCACACCACATGGAAAGTTTAGTCCACAGGAAGAAACAACTATTAATTCCATTATTGCTGCAAGTCACTATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGTCCATGGGATGAAATGAAGAACTTCGATGATAGCATTGCTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAAAACAAAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAATACCGGATAACCCAAAACCTTCAACTTGCCAATGAAAAGTCAATTAGCTATCAACGTAAAAGGCCTCTTCCTCCGCCTAAGGAAGTAATAGATCGTGACAATGCAGTTCTAGCAGTTCCAAAATTTGAATCAGTTGAGCCATCAGGTCCAGCTACGGTAGAATCAGCATGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGCGGTCATACAACTTGCAAGGAGTGTGGCTTGACATTATCTTCTTGCCCTATGTGCCGGCAGCCAATTACAACTCGTCTGAGACTATTCACTTGA 1329 0.4161 MGNAESSDSHADFHQRPRSSEGSSANTSYQYHQPPSFVGSSASASHQYHDHPSYDESSMNTSYQYHQPVQPSLYAGSLVNTKHHHKQRPTYIPDNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKYSFNHKSLHYIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDAYTHDQNVFSFYPDDRYCHGFEEVLARYREIVPHLKLAGPTSFAPVIDAAVDIVERSNGQYHVLVLIADGQVTRNSGTPHGKFSPQEETTINSIIAASHYPLSIILVGVGDGPWDEMKNFDDSIAQRLFDNFQFVNFTKIMSENKDASKKEAAFALAALMEIPIQYRITQNLQLANEKSISYQRKRPLPPPKEVIDRDNAVLAVPKFESVEPSGPATVESACPICLTNPKDMAFGCGHTTCKECGLTLSSCPMCRQPITTRLRLFT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03680 442 SUPERFAMILY vWA-like 114 297 IPR036465 -
Vian1g03680 442 ProSiteProfiles Zinc finger RING-type profile. 398 431 IPR001841 -
Vian1g03680 442 SMART ring_2 398 430 IPR001841 -
Vian1g03680 442 MobiDBLite consensus disorder prediction 18 61 - -
Vian1g03680 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 442 IPR013083 -
Vian1g03680 442 PANTHER COPINE FAMILY PROTEIN 1 9 419 - -
Vian1g03680 442 SMART VWA_4 113 316 IPR002035 -
Vian1g03680 442 Pfam Copine 138 351 IPR010734 -
Vian1g03680 442 MobiDBLite consensus disorder prediction 1 61 - -
Vian1g03680 442 SUPERFAMILY RING/U-box 391 437 - -
Vian1g03680 442 Gene3D von Willebrand factor, type A domain 131 320 IPR036465 -
Vian1g03680 442 Pfam Zinc finger, C3HC4 type (RING finger) 395 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03680 Vian-Chr1 59602718 59608759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03680 K16280 - gmx:100791316 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03680 1 59602718 59608759 Vian1g03680 1 59602718 59608759 ECH