Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03673 ATGCACCTTCACAAGCTTTCTAGCATGCCTTCCTCCTTGGGGAGTGCGTTCTTTCTGGTGGGTCACCGAGTTTTGGACATGAGAAGGAGTAATGGTTGTTTATTCCGGAAGAATCGGAGATGGGTCGGAGCATCCATTTCGTGTTCTGGTGTTAGGAACGATTTGCCTTCTATTGAACAGCTTAGTGATGCACGGGTAATATACTCCGTCGCTGCATCTATGGGACACAACCAGGAGGCTCATCCAGAATCACATTTTCGAGTTCCTGCAATTGTGAATGCTCTAGAAGAAATGCAGCTCTCTTCTAAGTTCCGTGGCTCTGAGTTAATTGAACTTCAAAATTTTGAGCCTGCTTCAGTAGATGATATTGCAAGTGTTCATGCAAGAGCCTATGTTTCTGGACTTGAAAAGGTTGCAGGTTCAAAGATAAAGAGTGATGCACCCACTGGTTTTGCTCTGATAAGACCTCCAGGACATCATGCTGTTCCACAAGGACCTATGGGCTTCTGCATTTTCAGCAATGTGGCCATTGCAGCCCGTCATGCTCAGCGTGTTCATGGACTGAAGCGGGTGTTTATTATTGATTTTGATGTTCATCATGGGAATGGAACAAATGATGCTTTCTATAATGATCCAGATGTATTTTTCCTTTCGTTTCATCAAGATGGAAGCTACCCAGGCACCGGTAAATTTAATGAAGTGGGAAGTGGGGATGGTGAAGGAACCACATTAAATCTGCCTCTTCCTGGAGGCTCAGGTGATACTGCTGTTAGAACCGTGTTCGATGAAGTTATTGTACCATGTGCCCAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGGTATGACGGGCACGTGTTGGATCCACTCGCTAATCTTCAATATACAACTGGAACATATTACATGCTAGCATCCAGTATTAAGCAACTAGCGAGGGATTTATGTGGGGGACGGTGCGTGTTTTTCTTGGAGGGAGGATATAATCTGAAGTCTCTGTCATATTCAGTGGCAGACACATTTCGTGCTCTTCTTGGTGATAGAAGCTTGGCATCTGAATTTGATGACCCTAACATTTTGTACGAAGAGCCATCTACAAAAGTTAAGCAAGCAATTCAGAGGATAAAACACATTCATTCCCTTTGA 1146 0.438 MHLHKLSSMPSSLGSAFFLVGHRVLDMRRSNGCLFRKNRRWVGASISCSGVRNDLPSIEQLSDARVIYSVAASMGHNQEAHPESHFRVPAIVNALEEMQLSSKFRGSELIELQNFEPASVDDIASVHARAYVSGLEKVAGSKIKSDAPTGFALIRPPGHHAVPQGPMGFCIFSNVAIAARHAQRVHGLKRVFIIDFDVHHGNGTNDAFYNDPDVFFLSFHQDGSYPGTGKFNEVGSGDGEGTTLNLPLPGGSGDTAVRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLARDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDDPNILYEEPSTKVKQAIQRIKHIHSL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03673 381 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Vian1g03673 381 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Vian1g03673 381 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Vian1g03673 381 PANTHER HISTONE DEACETYLASE 9-RELATED 145 380 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Vian1g03673 381 SUPERFAMILY Arginase/deacetylase 76 348 IPR023696 -
Vian1g03673 381 CDD HDAC_classII 81 345 - -
Vian1g03673 381 Gene3D Histone deacetylase domain 142 381 IPR037138 -
Vian1g03673 381 Gene3D Histone deacetylase domain 63 141 IPR037138 -
Vian1g03673 381 Pfam Histone deacetylase domain 145 343 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03673 Vian-Chr1 59530771 59539013 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03673 - - gmx:100788664 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03673 1 59530771 59539013 Vian1g03673 1 59530771 59539013 ECH