Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03656 ATGAAGGGTGGCACGGTTCAGATTATCTGGCACGAGAGAAAACCCGTCTTAACTCTCGATTTTCACCCCCTCACCGCCACTCTTGCCACCGCTGGCGCCGATTTCGACATCAAGTTTTGGTCGATAAAGCCATCAGGGACGGAGAAACTTCCCGTAGTTTCCTATCTCAGTAACCTCTCTTATCATAGCTCTGCAGTGAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTGGCCTCTGGCGCTGATGGAGGGGACCTGATAATATGGAAGCTAAATTCTGCCGATACTGGTCAGGCATGGAAGGTTCTCAAGATGTTACGATCTCATCTCAAGGACATTTTGGACCTGCAGTGGTCTTCCGATGCCACATATATCATATCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATGCCCATGCGCACTATGTTCAAGGGGTTGCATGGGACCCTCTAGGGAAATACGCTTCTTCTCTTAGTTCAGATAGGACTTGCAGAATTTACATGAATAAGCCTCATAAATCAAAAGGCACTGAGAAAATCAATTATGTTTGCCAGCAAGTCATTTCTAAGGCAGATAAGCCATTATTAAAAAATTCTCAGGAGACAAAAATTCACCTCTTCCACGACGAGACATTGCCATCTTTTTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTTTAGTTGTGCCTGCAGGCTCTCACAAAACTAATACTGCATCTGAGACTGTGAATGCGGCTTACATAATTTCTCGAAAAGATCTTTCTAGGCCTGCTATACTGCTCCCCTGCACAAATAAAGCTGTTGTAGCGGTCCGGTTCTGTCCCATAATTTTTAAACTTCGGGGAACGAACTCTCTTGACTCAGGTTTATCTCTAACTGCTGTCTTTATTTTTCTGCTGTCATCGCATCAGAATTTGAGTACTCATGATACTTCATGTATCGACGTATATCCAATACACATATACAGACATAGAAGCCTGATTGGGAAAATCAGTTGTTCAAGCTTAGCATTTTTTCTAAATAGTTCGGGAGTCACACAGTTATGTTCAGCAATGAATTTTTCTGATGAATTGCAAGGCTCAGAAGTAATAATCTCCAGAGTCCAAGGGATACAATTTAACTGGACAGAGACCGAGAAGGATATTGGAAAAAAAAATATTAAATTGGATATCATATTGAATCTGTTGCTTATCTCCAAAGAGGAGTGGCCCCTACCTTGTCAAAGTTCCCCAACTTTGTGCTTCAATCTTGAAGCCAGTCTTGTTCTCAAAGCAAATAAGAGAACAATAGCTACTATTGTGAACAATTAG 1353 0.4169 MKGGTVQIIWHERKPVLTLDFHPLTATLATAGADFDIKFWSIKPSGTEKLPVVSYLSNLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLNSADTGQAWKVLKMLRSHLKDILDLQWSSDATYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYASSLSSDRTCRIYMNKPHKSKGTEKINYVCQQVISKADKPLLKNSQETKIHLFHDETLPSFFRRLAWSPDGSFLVVPAGSHKTNTASETVNAAYIISRKDLSRPAILLPCTNKAVVAVRFCPIIFKLRGTNSLDSGLSLTAVFIFLLSSHQNLSTHDTSCIDVYPIHIYRHRSLIGKISCSSLAFFLNSSGVTQLCSAMNFSDELQGSEVIISRVQGIQFNWTETEKDIGKKNIKLDIILNLLLISKEEWPLPCQSSPTLCFNLEASLVLKANKRTIATIVNN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03656 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 148 IPR001680 GO:0005515
Vian1g03656 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 94 - -
Vian1g03656 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Vian1g03656 450 Pfam WD domain, G-beta repeat 143 180 IPR001680 GO:0005515
Vian1g03656 450 Pfam WD domain, G-beta repeat 59 91 IPR001680 GO:0005515
Vian1g03656 450 Pfam WD domain, G-beta repeat 102 139 IPR001680 GO:0005515
Vian1g03656 450 SUPERFAMILY WD40 repeat-like 7 289 IPR036322 GO:0005515
Vian1g03656 450 Gene3D - 4 258 IPR015943 GO:0005515
Vian1g03656 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 43 IPR001680 GO:0005515
Vian1g03656 450 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 396 IPR045145 GO:0006335
Vian1g03656 450 FunFam Chromatin assembly factor 1 subunit FAS2 4 249 - -
Vian1g03656 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 143 - -
Vian1g03656 450 SMART WD40_4 142 181 IPR001680 GO:0005515
Vian1g03656 450 SMART WD40_4 2 41 IPR001680 GO:0005515
Vian1g03656 450 SMART WD40_4 52 91 IPR001680 GO:0005515
Vian1g03656 450 SMART WD40_4 100 139 IPR001680 GO:0005515
Vian1g03656 450 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03656 28 197 Miscellaneous Gene Families AT5G08390 23.333 3.48e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03656 K10751 - gmx:100784411 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03656 1 59347973 59358041 Vian1g03656 1 59347973 59358041 ECH