Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03643 ATGGACGCGGGGCTGAAGACGGCCTACCGGAACGCGAAAGCGGCATACGAGAACGCGAAAGACGAGGGAAACCACCGGGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATACTGAAAAACCGTGGAGATTACTGCGATGCTCTAAAATGGCTCCGAATTGATTACGAAATTTCGCTCAAATATTTACCGGAGAAGCACTTGCTCCCAACCTGCCAATCCCTCGGCGAAGTGTACTTCCGCCTCGAAGACTTCAAAAACGCCCTAATTTTCCAGAAAAAGCACCTCGAGCTCGCCAGAGATGCAAACGACATCGTTGAGCAGCAGCGAGCGAGCACGCAACTCGGTCGGACTTACCACGAATTGTTCACGCGATCGGATCACGACCACAATTCGATTCGCAACGCGAAGAAGTACTTTAAGTGCGCGATGGATCTCGCGGTGAAGCTCAAGGAGAATCCTCCGAACAGCAAGTCTTCTTTTCTGAAGGAGTACATCGACGCGCACAACAACATAGGCATGCTTGAAATTGATCTTGACAACTTGCACGATGCGCGGAAGATTTTAACTACTGGATTGGAGATTTGTGATGAAGAGGAGGTCGCTGAATTCGATGATGGCCGCAGTAGGCTCCATCACAACCTTGGGAATGTGTATATGGAGCTTAGGCTTTGGGATGAAGCTAGGAAAAACATCAAGAGGGATATTGTGATTTGTAACAGAATTGGACACTGTCAAGGGGAGGCCAAGGGGTATATTAATCTTGGTGAAATGCATTACCGGACTCAGAGGTACGATGATGCCAGGGCTTATTACGATAAGGCGCTTGGTTTGGCGAAGTCCTTGGAGGATGAAGATGCCTTGGTTAAGCAAATTGAGCAGAACATTGAAACTGTGAGAGAAGCTGTTAAGGTAATAGCTGATATAACGAAAGAAGAACAAAGCCTTAAAAAGCTAAAGAGAGATATAGCCGCAGCTAGAGGTACATCGCATGAGCGGAAATTCTTGCTGCAGCAGAATGCAGTAGTTGAACGCCTTGTTGAGAAAGCAAGGACGATCTCTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATTGCAAGTGAACTCTGTGATAGGCAGAGGCTGGCTGATTCATATTTGGATGTTGCAGAATCATACCAGAAACTGAGAAAATTCAACAAAGCTATCAAATGGTACAAAAAGAGCTGGCAAATGTACAAAAATATTGGTAACTTAGAGGGGCAAGCGCTAGTGAAAATTAACATTGGTAATGTCTTGGATTCTACAAGCAATTGGAGAGATGCACTGGATGCGTTTCAAGAGAGTTACAGTATTGCTGTTGAAGCAGATCTGCCTGATGTGCAACTCTCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGACGAGGATGAGACCAGGAGGTTGAAACTTCTAATTGATAAACTGAAGAAATCCAAAGAAAAAGAGGCAGCAGCAAAAAATATGTCAGAGGATTGTTGCTCTGAAACTGATACTGAAGCAGACGATTATCTGTCTAACAGTGGATATGATAATATTTGCTTTCCAAAGACAATTTCTCGATCAAAAGCTCCAACTACTGGAGAAGAATTGGAAGATGACGCACCACTTATGTCCCTATACCAGTCCATAAAAAGCTCATCCAAAAATAAAACAGGCTACAAAGAAAGTCTTCTCAACTGTACCAAGCAAGCAGAGCACTCATCCAGTAGTCTGAAAAATCAACCCATTGATCATCAGACAATTGTTAGTCGAAAACGTCCTCATGTGATTCTTTCTGACGATGATGATGATGATGAGGTGAAATGTTCAAGCAGAAAAGATCATGATTGCCTGGTAGATGATTTGCCCACTTATAATGCCATTAAGAGTAAAGCCAGTCCTTGTAAAATTCAGGTTATCTCCGAGCATGGATCTAAGAGTGAAATTAATGTTGAAGAAAGTAGTACTTCTTTCAAATGTTCAAGTCCATATACAACCACAAAAACTGGAAGACATTCTAGGTCTTTGAGCAATGATGTATTTGCCGAGGCCAATTTCCGTACTGGTTCTAAATGTGACACTGATTTCTCTGGCAAACAAAATGATATTTCCCAGCCCAGGTTGCATCATCCCCAAAATGACTCCCAGAAATGTATTGCATGTCGGATTGGGAATGATATAGTACACGTTGAAGCAAGCTTGTGTACCACCGGTGATCAATTGAACATTGACTCTTTGAAGGCTGTAGTTGCATGCTTATATTATCTACAATTTCCGTCGGAGAAGAGATCAGAGGGTTTGTTGCCCATTATTGAGCATATGAAATGTGCTGGAAGAAATATGGAATCCCTGGAAACTGTTGAACATCTTAAAGAAGTTTTGGGAAATGACATGGTTGAAGCTTCTGTTGATGGATGGATTCACAAGCGCTTGATAAAAATGTACGTAGATTGCTGCAAGGAGTTGTCTGAGGTACCAAACATTAAGGTACTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGATTGTGACCTGCAAGATTTGTCAATTACACCATTAATAAATGCACTGCATTCCCAAAAGTCATTTGCGATGCTGGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAAAAACTTCAAAAAGTGTTCACAGCATCGGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGTAATCGTTTTGGCCCGACAACGTTGTTTCAAATTTGCGAGTGTTCACTGCTATTTGCTAGACTAGAAGTTCTTAACATATCTGGAAACCGCCTTACTGATGCATGTGGATCATATCTTTCGACAATCTTAAAAAACTGTACAGCGCTTTGTAGCTTGAACATAGAGAACTGTTGTGTCACATCCAGAACTATTCAAAAAGTAGCAGATGCATTGGACTCCAGATCTGCCCTTGCCCATCTATCTATAGGATACAACAGTCCTGTATCTGGAAATGTTACAGTTAATCTTTTGTCCAAGCTTTCCACTCTGAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTCGATACCCTTTGCAAGCTTGCAGGGAGCTTAACTTTATCAGGACTAATGCTTGGAGGCACAGGCATTGGAACTTTTGCCTTGCCCACATGGTCTACTGATGATAGAGGCAATACTCTGCAGGAAGGGGCGAAAAAATTAGTAGATTCTTTGCTCAAAGGGAATGAAGAGCTTGTGAAGCTTGACCTATCATATTGTGGTCTAACATGTAACTTTGTTTTAAACACCAGTGTTAATTTCTTTTGTTCCATCCTAGAGCTAAACCTGGAAGGAAATCCTATCATGCATGAGGGCAGCGATACTTTATTTTCACTTCTCGTAAACCCCCAGTGCTGTCTCAAAGTTTTGGTTCTTAGAAAGTGTCAACTTGGGCTTACTGGAATCCTTCACATAATTGAGGCTCTTGCAGAGAACAGCTGCATTGAAGAACTTAATATTGCTGATAATTCTGTTCCAAAGGAATATTCCGCTCTCCAATATGATTTATCAGTAAAAAGCTGCTCACAAAACCAGGAGCAGAAACTAGATACTATGCAAGTTGATGATAATCAAGAGATCCTCTGCTCTTTAAACGCAGCCAACTACAAGCTGGAAGTTGCTGATAGTGAAGATATTCCTCTGGAAGCTGCTGCTTCTGGAATTGACGACAGCTGTGCCAGTTCGTGTCAAAAAAATTCATCTCCCGAGTGCCATTTGACGGAACAGTTTGCAATTGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCAATAATGGTTTTTCTGCGCAAGCTGCGGAAACATTCTATGGCTCGTGGGCGACTTTACGACCCCTTTCAAGTCAGAAGCACATTACCGAGCAGATTGTTCATTTCTCTACAAGGGAAAATAAATGCTGCAGAGTGAAACCTTGCTGCAAGAAAGCTTGA 4020 0.4219 MDAGLKTAYRNAKAAYENAKDEGNHREEARWANVIGDILKNRGDYCDALKWLRIDYEISLKYLPEKHLLPTCQSLGEVYFRLEDFKNALIFQKKHLELARDANDIVEQQRASTQLGRTYHELFTRSDHDHNSIRNAKKYFKCAMDLAVKLKENPPNSKSSFLKEYIDAHNNIGMLEIDLDNLHDARKILTTGLEICDEEEVAEFDDGRSRLHHNLGNVYMELRLWDEARKNIKRDIVICNRIGHCQGEAKGYINLGEMHYRTQRYDDARAYYDKALGLAKSLEDEDALVKQIEQNIETVREAVKVIADITKEEQSLKKLKRDIAAARGTSHERKFLLQQNAVVERLVEKARTISAWEKHCEFAKEKKKIASELCDRQRLADSYLDVAESYQKLRKFNKAIKWYKKSWQMYKNIGNLEGQALVKINIGNVLDSTSNWRDALDAFQESYSIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKKSKEKEAAAKNMSEDCCSETDTEADDYLSNSGYDNICFPKTISRSKAPTTGEELEDDAPLMSLYQSIKSSSKNKTGYKESLLNCTKQAEHSSSSLKNQPIDHQTIVSRKRPHVILSDDDDDDEVKCSSRKDHDCLVDDLPTYNAIKSKASPCKIQVISEHGSKSEINVEESSTSFKCSSPYTTTKTGRHSRSLSNDVFAEANFRTGSKCDTDFSGKQNDISQPRLHHPQNDSQKCIACRIGNDIVHVEASLCTTGDQLNIDSLKAVVACLYYLQFPSEKRSEGLLPIIEHMKCAGRNMESLETVEHLKEVLGNDMVEASVDGWIHKRLIKMYVDCCKELSEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTTLFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCCVTSRTIQKVADALDSRSALAHLSIGYNSPVSGNVTVNLLSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGSLTLSGLMLGGTGIGTFALPTWSTDDRGNTLQEGAKKLVDSLLKGNEELVKLDLSYCGLTCNFVLNTSVNFFCSILELNLEGNPIMHEGSDTLFSLLVNPQCCLKVLVLRKCQLGLTGILHIIEALAENSCIEELNIADNSVPKEYSALQYDLSVKSCSQNQEQKLDTMQVDDNQEILCSLNAANYKLEVADSEDIPLEAAASGIDDSCASSCQKNSSPECHLTEQFAIAIGKAKNLQLLDLSNNGFSAQAAETFYGSWATLRPLSSQKHITEQIVHFSTRENKCCRVKPCCKKA 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03643 1339 SUPERFAMILY TPR-like 8 200 IPR011990 GO:0005515
Vian1g03643 1339 Coils Coil 282 302 - -
Vian1g03643 1339 ProSiteProfiles TPR repeat profile. 249 282 IPR019734 GO:0005515
Vian1g03643 1339 SMART tpr_5 249 282 IPR019734 GO:0005515
Vian1g03643 1339 SMART tpr_5 69 102 IPR019734 GO:0005515
Vian1g03643 1339 SMART tpr_5 166 199 IPR019734 GO:0005515
Vian1g03643 1339 SMART tpr_5 420 453 IPR019734 GO:0005515
Vian1g03643 1339 SMART tpr_5 380 413 IPR019734 GO:0005515
Vian1g03643 1339 SMART tpr_5 209 242 IPR019734 GO:0005515
Vian1g03643 1339 Gene3D Ribonuclease Inhibitor 1068 1320 IPR032675 -
Vian1g03643 1339 Gene3D Ribonuclease Inhibitor 826 1067 IPR032675 -
Vian1g03643 1339 FunFam tonsoku-like protein 313 473 - -
Vian1g03643 1339 Pfam Tetratricopeptide repeat 209 280 - -
Vian1g03643 1339 Pfam Tetratricopeptide repeat 380 450 - -
Vian1g03643 1339 SUPERFAMILY RNI-like 843 1307 - -
Vian1g03643 1339 PANTHER PROTEIN TONSOKU 8 1338 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Vian1g03643 1339 FunFam Protein TONSOKU 6 158 - -
Vian1g03643 1339 FunFam Protein TONSOKU 826 1214 - -
Vian1g03643 1339 SUPERFAMILY TPR-like 165 449 IPR011990 GO:0005515
Vian1g03643 1339 ProSiteProfiles TPR repeat profile. 380 413 IPR019734 GO:0005515
Vian1g03643 1339 SMART LRR_RI_2 933 960 - -
Vian1g03643 1339 SMART LRR_RI_2 1145 1172 - -
Vian1g03643 1339 SMART LRR_RI_2 1116 1143 - -
Vian1g03643 1339 SMART LRR_RI_2 874 901 - -
Vian1g03643 1339 SMART LRR_RI_2 961 988 - -
Vian1g03643 1339 Coils Coil 309 329 - -
Vian1g03643 1339 Gene3D Tetratricopeptide repeat domain 311 471 IPR011990 GO:0005515
Vian1g03643 1339 Gene3D Tetratricopeptide repeat domain 3 310 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03643 - - gmx:100805682 2257.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03643 1 59162183 59172573 Vian1g03643 1 59162183 59172573 ECH