Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03481 ATGGAATTGCTCATTAAGATTCTCTCTGCGCTAATAATATTGTTCTCCGGAGGACCCATACTTGAAGTTAGGCCCGTGGCAGTGACGGCTCTCCCACTCCGCACGGATTCTCGATGGATCGTGGGCCAAGATGGCCGAAGGGTAAAGCTGGCCTGTGTGAATTGGGTTTCCCACGTGGAAGCTGTGGTGGCAGAAGGGCTCAGCAAAAAGCCCGTCGATAACATTTCCCAGGGAATAAAGTCCATGGGCTTCAACTGTGTCAGGCTCACTTGGCCCATACTTTTGGTGACAAACGACTCTCTGGCTTCTCTCACCGTTAGACGCTCCTTTCAGAACCTCGGCCTCCTTGAATCCATCGCCGGTGTCCAAACCAACAACCCCTCCATCATTGACCTTCCGCTCATCCAAGCTTTTCAGGCAGTGGTGAAAAGTCTTGGAGATAACGATGTGATGGTGATATTGGACAACCACGTAACGCAACCAGGGTGGTGTTGCAGTAATTCTGACGGGAATGGGTTTTTCGGTGACAAATTTTTTGACCCAAATTTGTGGTTGTCGGGTCTGACCAAGATGGCCACACTTTTCAATGGGGTCAGTAATGTGGTGGGTATGAGCTTGAGGAACGAGCTCCGAGGACCCAAACAGAATGTGGACGATTGGTACATGGTGAAAGGAGCAGAAACAGTCCATGCTGCAAATCCAGATGTTCTTGTGATTCTATCAGGCCTAAATTTTGACAAGGACTTGTCATTCATTCAAAAACGACAGGTGAACGTGACATTTAAGGAAAAATTAGTATTTGAGGCTCATTGGTATGGGTTTACTGATGGTGAAGCTTGGGTGAATGGTAACCCAAACCAAGTATGTGGACAAGTGGCTGGAAATTTCATGAGAACCTCTGGCTACTTGGTGAACCAAGGATGGCCTCTGATTATCAGTGAGTTTGGTGTAGACTTAAGAGGCACCAACGTCAACGACAATCGCTACCTTAACTGCTTCTTAACAGTAGCAGCTGAGCATGACTTGGACTGGGCATTGTGGACACTCGTTGGAAGCTACTACTTTAGACAAGGAGTTGTAGGAATGGAAGAGTTTTATGGCATTCTTAATTGGGATTGGTCCCAAGTTAGGAATCTCACTTTCTTAAACAGAATCTCTTCCCTCCAACTTCCTTTTCGAGGTCCTGGCATAACAAAAGGCAATCCGTACAAATTGATATACCATCCCTCAACTGGGTTGTGTGTGATAAGAAAGACATTACTAGAGCCATTAACATTAGGACCTTGTTATTTATCTGAAGGTTGGAAATACACACCCCAAAAAATTCTGTCAATAAAGGGTACCTACTTCTGCATTGAAGCGGAGAGTGAAGGGATGGCTGCCATGCTTGGGATAATATGCTCAGATTCTAACTCTAGATGGGAAATGATCTCAGATTCCAAGTTGCATCTTTCCTCTAAACTCAGTGATGGTTCTGATGTATGCCTAGATGTAGATGACAACAATGTCATTGTGACGAATGCATGTAAATGTTTGACCAGAGATCGTTCATGCGACCCTAGTAGCCAGTGGTTCAAACTTATTGACAGTGGAAGGAGGCCAATCTTCACAAGCTCATCATCATCATCCATGCAAAATTCATCGGACCTTTTATGGAAACAATTGAGCTCAATATAA 1677 0.4508 MELLIKILSALIILFSGGPILEVRPVAVTALPLRTDSRWIVGQDGRRVKLACVNWVSHVEAVVAEGLSKKPVDNISQGIKSMGFNCVRLTWPILLVTNDSLASLTVRRSFQNLGLLESIAGVQTNNPSIIDLPLIQAFQAVVKSLGDNDVMVILDNHVTQPGWCCSNSDGNGFFGDKFFDPNLWLSGLTKMATLFNGVSNVVGMSLRNELRGPKQNVDDWYMVKGAETVHAANPDVLVILSGLNFDKDLSFIQKRQVNVTFKEKLVFEAHWYGFTDGEAWVNGNPNQVCGQVAGNFMRTSGYLVNQGWPLIISEFGVDLRGTNVNDNRYLNCFLTVAAEHDLDWALWTLVGSYYFRQGVVGMEEFYGILNWDWSQVRNLTFLNRISSLQLPFRGPGITKGNPYKLIYHPSTGLCVIRKTLLEPLTLGPCYLSEGWKYTPQKILSIKGTYFCIEAESEGMAAMLGIICSDSNSRWEMISDSKLHLSSKLSDGSDVCLDVDDNNVIVTNACKCLTRDRSCDPSSQWFKLIDSGRRPIFTSSSSSSMQNSSDLLWKQLSSI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03481 558 SUPERFAMILY Ricin B-like lectins 400 527 IPR035992 -
Vian1g03481 558 Gene3D Glycosidases 31 389 - -
Vian1g03481 558 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 15 530 - -
Vian1g03481 558 Pfam Cellulase (glycosyl hydrolase family 5) 71 349 IPR001547 GO:0004553|GO:0071704
Vian1g03481 558 SUPERFAMILY (Trans)glycosidases 31 381 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03481 Vian-Chr1 57361235 57363896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03481 30 558 Glycoside Hydrolase AT1G13130 57.570 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03481 - - vun:114177138 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03481 1 57361235 57363896 Vian1g03481 1 57361235 57363896 ECH