Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03467 ATGGATCCCTCTCCTCGCCCGGCTGTAGTCATCGATAATGGCTCCGGGTATACTAAGATGGGGTTTGCTGGTAATGTCGAGCCATGTTTTATTATTCCGACAGTGGTTGCAGTTAATGAGTCTTTTCTGAATCAATCGAAGAACCTCTCTAAAGCCAATTGGTTGGCCCAGCACAACGCTGGAGTGATGGCGGATCTTGATTTCTTCATCGGGGATGAGGCACTTACCAAGTCTCGATGTAGTAGCACTTACAATCTCAGCTACCCAGTTCAGCATGGCCAGGTTGAGAATTGGGATGCCATGGAGCGCTACTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCGGAGGATCACTATTTTCTCTTGACTGAGAGTCCATTGACTTCGCCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAACGTACCTGGGCTTTACATTGCTGTGAATTCTGTGCTTGCCCTTGCAGCTGGTTACACCACATCTAAGTGTGAGATGACAGGAGTTGTAGTGGATGTTGGAGAAGGGGCGGCTCATGTTGTACCTGTCGCAGATGGCTATGTTATTGGTGGCAGCATCAAATCAATTCCTATTGCTGGAAAGGATGTTACTCTTTTTGTGCAGAAGCTCATGCGGGAAAGAGGAGAGAATGTTCCACCCGATGACTCTTTTGAAGTGGCACGAAAAGTGAAGGAAATGTATTGCTACACTTGCTCTGACATAGTGAAGGAATTTAATAAGCATGACAAAGAACCAACCAAGTATATGAGGCATTGGAGAGGCATTAAACCAAAGTCAGGGGCACCATATTCTTGTGATATTGGCTACGAACGATTTCTTGGCCCTGAGATTTTCTTTAATCCTGAGATATATGGTAGTGACTTTACTACCCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCTGCACCGATTGACACGAGGAGATCACTATACAAGAATATAGTGTTGTCTGGCGGTTCAACCATGTTCAAGGATTTTCACAAGAGATTGCAGCGTGATCTAAAAAAAATTGTGGATACTCGTGTCCTTTTATCTGAAGCACGCTTAAATGGGGAGATAAAATCGCAGCCAGTGGAGATAAATGTGGTGAGCCACCCAATTCAGAGATTTGCAGTTTGGTTTGGAGGATCCGTACTTGCATCAACTCCTGAATTTTTTACGGCTTGTCATACAAAGGCAGAATATGAAGAGCATGGAGCAAGCATTTGCCGTACAAATCCTGTTTTCAAGGGAATGTATTAA 1284 0.4431 MDPSPRPAVVIDNGSGYTKMGFAGNVEPCFIIPTVVAVNESFLNQSKNLSKANWLAQHNAGVMADLDFFIGDEALTKSRCSSTYNLSYPVQHGQVENWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTSPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGEGAAHVVPVADGYVIGGSIKSIPIAGKDVTLFVQKLMRERGENVPPDDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPTKYMRHWRGIKPKSGAPYSCDIGYERFLGPEIFFNPEIYGSDFTTPLPVVIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHKRLQRDLKKIVDTRVLLSEARLNGEIKSQPVEINVVSHPIQRFAVWFGGSVLASTPEFFTACHTKAEYEEHGASICRTNPVFKGMY 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03467 427 CDD NBD_sugar-kinase_HSP70_actin 9 205 - -
Vian1g03467 427 Gene3D Actin; Chain A, domain 4 204 302 - -
Vian1g03467 427 SMART actin_3 6 422 IPR004000 -
Vian1g03467 427 FunFam Putative actin-related protein 5 386 414 - -
Vian1g03467 427 Gene3D - 157 385 - -
Vian1g03467 427 FunFam Actin-related protein 3 9 173 - -
Vian1g03467 427 Pfam Actin 7 418 IPR004000 -
Vian1g03467 427 SUPERFAMILY Actin-like ATPase domain 6 176 IPR043129 -
Vian1g03467 427 PANTHER ACTIN 8 414 IPR004000 -
Vian1g03467 427 FunFam Actin-related protein 3 (ARP3) 204 302 - -
Vian1g03467 427 SUPERFAMILY Actin-like ATPase domain 172 422 IPR043129 -
Vian1g03467 427 Gene3D - 9 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03467 Vian-Chr1 57251877 57257252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03467 8 417 Miscellaneous Gene Families AT2G42100 34.383 8.02e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03467 K18584 - gmx:100780462 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03467 1 57251877 57257252 Vian1g03467 1 57251877 57257252 ECH