Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03188 ATGGCTGCGTACGCATATGACGACCAGTTACTCATCCATGTTTTTCAAGACAGTCTGGTTGGGGTAGCATTAAACTGGTATACCCAATTGGAGCCCTCTCGAATCCATTGTTGGGCAGATCTAGCCGACGCCTTTATAAAACGGTATATATACAACACGCATGTAGCACCGGACCGTCTGCAATTACAGAATATGGGAAAGAAAGACAATGAGACCTTCAAGGAATATGCCCAACGTTGGAGAGAATTGGCCACACAAGTGGATCCGCCTTTGTTTGAAAAAGAAATGGTGGCAATGTTTGTAAATACGCTTCAGCCGCCATTTTATGAATATATGGTAGGGAATGTGTCCGCCAATTTCGCTGACGTCGTCATAATCGGCGAAAGGATAGAAATTGGGGTGAAGAATGGGAAGATTGCAGGCGGTCCATCTACGACAGAGAACTCTAAAAAGAAGCCTTCTTTCAATCCAGAATTATTACCTCACCTCGTCAAAAGGGGTCTGGTTGCTATATGTCCAATGATACCCTTGCAGCCTCCATACCCTAGGGGTTATGATGCAGATGCCAAGTGTAGTTATCACGGGGAAGGCGTGGGTCACTCAACTGAAAGGTGTATGGCTTTCAAACATAAAGTGCAGGCCCTGATTAACGCTGGGTGGCTAAAATTTCAAGAAGATAAACCTAGCATTGATACTAATCCGTTATCCGGACATGGTAATGCCTCGACAAATGCCATTGAGGTTAAGAAGCATGAACTGATAAGGGATGCAAGTAAGATCCGAAGTTCCAGAAGGTTTATTTTCAAGGAATTATTAAAGTTGGGATTTTTAAACGGGGATTATGATTTGGAAAGAGCATGTGGACTCCATCCATGCACGGAACACTCTATCGAGGAATGCGTTGAATTCGAAAAGTTTCTACAAGATCTGCTTGATAGGAATTTGATGCAAGTGTGCTATGAAGACAAGTATGAGGAGGTGTTTGCACAAACTGGTATGGAGACAGATGTAACTTTGCCAGAGCCGTTGATAATCCGTTTCACTAGAACCACCCCTACACCAGTAATTCAAGGAAGATCGCCTGTTGTCATCCATACACCAGTTCCTTTTCCTTACAAAAGCGAGAAAGCTGTCCCTTGGAGGTATGGGACACATGTAGTCGACGAAGGACAATGCATTGAAAGCCAATACTCTAGCCAGGATCTAGCTGTTGAAAATATATCAGGCATCGGCGGAATGACAAGGAGTGGTCGAATCTTCACGCCACCAAACTTGACGGGAAGAGGAGCTAGCAATAATGAAACACCAATGGACGCAAATACTAAGGAGCATTTAAAGGGGAAAGGGGTGCAAGTAGAGGAGACCTCTGACAAGGCAGACAAGAAAGAAATCTCTGAGGAAGAGGCCTGCGAATTTTTAAAATTCATTCAACAGAGTGAATATAAGGTGGTGGAGCAGTTAAATCGCATGCCTGCTCGGATTTCCTTGTTAGAATTGCTTATGCATTCTACCTCTCACAGAAAGTTGTTGATGAAGGTACTCAGTGAGGCTCATGTCGAGCATGGTATTTCGTTGAACAAGTTTGAGGGTATCGTTGGCAACATCATCTCTAATAATTACCTCACCTTTACTGACGAGGAGATACCCACTGAGGGGAGAGGTCATAACAAGGCTCTTCATGTCTCCGTGAAATGTTTAGATCACGTTATAGCACGTGTCTTGGTAGACAATGGTTCCTCTCTGAATGTCATGCCAAAATCAACATTGGAGAAGCTACCATGTGATGGAATGCATATGAAACCAAGCTCTATGATTGTGAGGGCATTTGACGGCAGTAAAAGGGTAGTGATGGGAGAAATTGAATTGCCCGTTCAAGTCGGTCCTTGTGTCTTTCAAGTAACCTTTCAAGTTATGGATATCCTCCCGGCTTATAGTTGTTTGTTGGGTCGCCCGTGGATCCATTCCGCAGGAGTTGTGCCTTCCACACTACACCAAAAGCTGAAATATGTTATGGGAGATAAGCTGGTGATAATATCAGGAGAGGAGGACCTCCTTGTGAGCGGACCATCGTCCACGCGATATATTGAGGCAGCCGAGGAAGCTCTGGAAACAGCTTTTCAATCATTAGAAATTGTGGGAAACACCTATGTTGAGCCATTTCCTATGAACCCACATTTATCATGCACCTCTATCATGGTGGCCAAGGTCATGCTGAAAGAAGGTTATAAGTACGGGAATGGTTTAGGCAAGTATGGACAAGGACGTACATTCCCATTGGAGATGATTGGGAACAAAAACAGATATGGCCTGGGGTATAGACCCAACAAGGAAGATAACAAGAGGTTGATTGAGGAAAGGAAGGAACGCAGTCTGGCTCGAATGGGGAAATGGGAACCAAGGGCAAAGAAAATCCACATTTGTGGTATCAAAGAGAGTTTTCGCAGTGTTGGATGGGTGAACACTAGTCATATAGCGGTGGTGGAAGAGGAAGCAAGATCTGAAAGCTCAAACTTCGTGTGGGTTTGCTCCCCAGGTGCACGGCTCAACAATTGGAGGACTCTGGATTTACCCGTGATGTCTAAATCAATTGAAATATATGACAATGAATGTTTTGAAAATAAAAATGTCAATATCCCTAAGTGGGAGCACCCTGTCATTAATGCGGAAGATGATCCGGAAGATGACCCGGAACCCTCTCCAGAGCTCTTGAGATTAGTGGAACAAGAGTCTAAAGAGATAAAACCCCATCAGGAGGATGTTGAAATACTCAACTTGGGAGAGGAAGGAGAGATAAAGGAAGTAAAAATCGACATGCCAGGGTTGGATACCGATATTGTGCAACACAAACTCCCACTTAAGCAGGAATGCCTTCCAGTCAAGCAAAGACTAAGAAGAATGAAACCAGAAATGTCATTGAAAAAAGATGGGAAGGTTCGAATGTGTGTCGACTATCGTGATTTGAATCGTGCAAGTCCGAAGGATAACTTCCCGTTACCACACATCGACACTTTAGTTGACAATACAGCCAAGTACTCGCTATTTTCGTTCATGGATGGTTTCTCGGGGTATAATCAGATTAAGATGGCGCCTGAGGACATGGAAAAGACGACCTTCATTACGTTGTGGGGGACCTTTTGTTATAAGGTAATGTCTTTCGGGCTCAAGAATGCCGGGGCAACATATCAAAGGGCGATGGTGACACTTTTTCATGATATGATGCACAAGGAGATCGAGGTTTATGTGGATGACATGATTGCAAAGTCTGAATTGGAAGAAGAACATGTCCTCAACTTGAAGAAATTATTTGAAAGATTGAGAAAGTATAAACTCAGGTTAAACCCTGCCAAATGCACATTTGGAGTGAAATCCGGGAAGTTGTTGGGCTTCGTGGTTAGCCAAAAAGGGATAGAAGTGGATCCTGACAAAGTGCGAGCGATATCAGAAATGCCTGCGCCTAGCACGGAGAAGGAGGTTCGCGGTTTTCTGGGTAGATTGAACTACATTGCTAGATTCATCTCCCAATTAACCGCTACCTGCGAACCAATGTTCAAGTTGCTACGAAAGAATCAGGTTATGGTTTGGAACGAGGATTGTCAAGCCGCTTTTGAAAAAATCAAACAATACCTGCAAGACCCACCTATATTACGTCCACCCGAGCCAGGAAGACCACTCATTTTGTACTTAACTGTATTGGAAAGGTCAATGGGTTGTGTATTGGGTCAACATGATGAAGCTGGAAAAAGAGAGCATGCAATATATTACTTGAGCAAGAAATTCACAGACTACGAACAACGATATTCATCGTTAGAGCGAACTTGTTGTGCATTGGCATGGGCTGCTCATCGCGGTAGTGCTCTAGCAGAATACTTAGCTCATCAACCCATCAACGATTATCAGCCAATGCAACCTGAATTTCCCGATGAGGGTATCATGACTCTATTCGAAGAAGGCAGGAAAGACCGAGACGAAGAAACATGGATATTACTATTTGATGGAGCATCGAATATGATGGGGCATGGCATAGGGGCAATACTTATCTCTCCAGGGCAACAGTACATGCCCATGACATCAAGGTTGTGTTTTAATTGCACGAATAACATTGCAGAATATGAGTTGAAGGGAGAGTGGGAAACAAGAGACGCAAAATTAATCCCTTACCAGGCATACATCAAAGGATTAATGGAGTGTTTCGACATCATCACATTTGACCACATACCACGGGAAGATAACCAATTAGCAGACGCGTTGGCTACTTTGTCATCCATGTTTGAGATTGACCCAAATACAGAATTACCAGTGATTGAAATGAAGAGCCATGCGGAGCCAGCATATTGCCAGTTCATCAAGGAGGAGGTGGATGGTAAACCCTGGTACTTTGATATCAAGCACTATCTTAAGACCCGAGAATATCCTGAAAAAGCATCTGAAAATGATAAAAGGTCGTTACGAAGGTTGGCTGGTAGCTTTATTTTAAGTGGGGACATTTTATACAAGAGAAATCATGACATGATTCTCCTCAGATGTGTAGATACAAAAGAGGCCGAATTGATATTGAAAGAAGTACACGAAGGTACATTCGGCACCCACATGAATGGGCACTCAATGGCTAGGAAGATCTTGAGAGCTGGTTACTTCTGGTTAACCATGGAAAATGATTGTTGTACACACGTGAGGAGGTGCGAGAAATGTCAGATGCATGCAGACAATATCAATGTATCACCCACGACTTTGAATGTGCTGTCTGCACCATGGCCGTTTTCAATGTGGGGGATAGATGTTATTGGAGCTATAGAGCCAAAAGCGTCAAATGGACACCGCTTCATACTGGTCGCAATAGATTACTTTACCAAGTGGGTTGAAGCCGTTTCTTATGCCAACGTAACTAGAAAGGTGGTGACCAGATTCATAAAAAAGGAGTTGATCTGCAAATATGGGCTGCCTAATAAGATCATCACTGATAATGCTACCAACCTGAACAACCGGATGATGGCAGAATTATGTGAGGAGTTCAAAATTCATCATCTTAATTCTTCTCCTTACCGTCCAAAAATGAATGGGGCAGTAGAAGCTGCTAATAAGAATATCAAGAAGATCGTGCAAAAGATGGTGGTCACCTATAAGGATTGGCATGAAATGCTTCCCTTTGCTTTACATGGATATCGTACTTCAGTACGAACGTCCACTGGTGCAACACCTTTCTCGCTGGTGTATGGGATGGAAGCAGTGCTTCCATTTGAGGTGGAAATCCCATCTCTACGAATTTTATTGGAAACCCAATTGGAGGAAGCTGAGTGGGTTCAAGCTCGGTTTGACCAGCTCAATCTCATCGAAGAGAAGAGACTGACAGCGGTGTGCCACGGGCAATTGTATCAAAGAAGAATGAAAAAGGCTTTCGACAAAAAAGTACACCCAAGGGATTTCCATGAAGGCGAACTGGTGTTAAAGAAGATATTGCCCATACAAAGGGATTTCAGAGGCAAATGGACCCCAAATTATGAAGGGCCATTCGTAGTAAAAAGGGCATTCTCTGGAGGGGCACTAATTCTCACAAGGATGGACGGAGAGGAGTTACCTTTACCGGTCAATTCTGATGCGGTAAAAAAGTTTTACGCATGA 5616 0.4355 MAAYAYDDQLLIHVFQDSLVGVALNWYTQLEPSRIHCWADLADAFIKRYIYNTHVAPDRLQLQNMGKKDNETFKEYAQRWRELATQVDPPLFEKEMVAMFVNTLQPPFYEYMVGNVSANFADVVIIGERIEIGVKNGKIAGGPSTTENSKKKPSFNPELLPHLVKRGLVAICPMIPLQPPYPRGYDADAKCSYHGEGVGHSTERCMAFKHKVQALINAGWLKFQEDKPSIDTNPLSGHGNASTNAIEVKKHELIRDASKIRSSRRFIFKELLKLGFLNGDYDLERACGLHPCTEHSIEECVEFEKFLQDLLDRNLMQVCYEDKYEEVFAQTGMETDVTLPEPLIIRFTRTTPTPVIQGRSPVVIHTPVPFPYKSEKAVPWRYGTHVVDEGQCIESQYSSQDLAVENISGIGGMTRSGRIFTPPNLTGRGASNNETPMDANTKEHLKGKGVQVEETSDKADKKEISEEEACEFLKFIQQSEYKVVEQLNRMPARISLLELLMHSTSHRKLLMKVLSEAHVEHGISLNKFEGIVGNIISNNYLTFTDEEIPTEGRGHNKALHVSVKCLDHVIARVLVDNGSSLNVMPKSTLEKLPCDGMHMKPSSMIVRAFDGSKRVVMGEIELPVQVGPCVFQVTFQVMDILPAYSCLLGRPWIHSAGVVPSTLHQKLKYVMGDKLVIISGEEDLLVSGPSSTRYIEAAEEALETAFQSLEIVGNTYVEPFPMNPHLSCTSIMVAKVMLKEGYKYGNGLGKYGQGRTFPLEMIGNKNRYGLGYRPNKEDNKRLIEERKERSLARMGKWEPRAKKIHICGIKESFRSVGWVNTSHIAVVEEEARSESSNFVWVCSPGARLNNWRTLDLPVMSKSIEIYDNECFENKNVNIPKWEHPVINAEDDPEDDPEPSPELLRLVEQESKEIKPHQEDVEILNLGEEGEIKEVKIDMPGLDTDIVQHKLPLKQECLPVKQRLRRMKPEMSLKKDGKVRMCVDYRDLNRASPKDNFPLPHIDTLVDNTAKYSLFSFMDGFSGYNQIKMAPEDMEKTTFITLWGTFCYKVMSFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSELEEEHVLNLKKLFERLRKYKLRLNPAKCTFGVKSGKLLGFVVSQKGIEVDPDKVRAISEMPAPSTEKEVRGFLGRLNYIARFISQLTATCEPMFKLLRKNQVMVWNEDCQAAFEKIKQYLQDPPILRPPEPGRPLILYLTVLERSMGCVLGQHDEAGKREHAIYYLSKKFTDYEQRYSSLERTCCALAWAAHRGSALAEYLAHQPINDYQPMQPEFPDEGIMTLFEEGRKDRDEETWILLFDGASNMMGHGIGAILISPGQQYMPMTSRLCFNCTNNIAEYELKGEWETRDAKLIPYQAYIKGLMECFDIITFDHIPREDNQLADALATLSSMFEIDPNTELPVIEMKSHAEPAYCQFIKEEVDGKPWYFDIKHYLKTREYPEKASENDKRSLRRLAGSFILSGDILYKRNHDMILLRCVDTKEAELILKEVHEGTFGTHMNGHSMARKILRAGYFWLTMENDCCTHVRRCEKCQMHADNINVSPTTLNVLSAPWPFSMWGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAVSYANVTRKVVTRFIKKELICKYGLPNKIITDNATNLNNRMMAELCEEFKIHHLNSSPYRPKMNGAVEAANKNIKKIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVEIPSLRILLETQLEEAEWVQARFDQLNLIEEKRLTAVCHGQLYQRRMKKAFDKKVHPRDFHEGELVLKKILPIQRDFRGKWTPNYEGPFVVKRAFSGGALILTRMDGEELPLPVNSDAVKKFYA 1871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03188 1871 Gene3D - 996 1131 IPR043128 -
Vian1g03188 1871 CDD retropepsin_like 566 654 - -
Vian1g03188 1871 MobiDBLite consensus disorder prediction 415 461 - -
Vian1g03188 1871 MobiDBLite consensus disorder prediction 419 438 - -
Vian1g03188 1871 Pfam RNase H-like domain found in reverse transcriptase 1194 1282 IPR041577 -
Vian1g03188 1871 Gene3D - 1578 1777 IPR036397 GO:0003676
Vian1g03188 1871 ProSiteProfiles G-patch domain profile. 729 775 IPR000467 GO:0003676
Vian1g03188 1871 SUPERFAMILY Ribonuclease H-like 1325 1422 IPR012337 -
Vian1g03188 1871 Gene3D - 1141 1220 IPR043128 -
Vian1g03188 1871 Pfam Retrotransposon gag protein 15 105 IPR005162 -
Vian1g03188 1871 SMART G-patch_5 727 773 IPR000467 GO:0003676
Vian1g03188 1871 CDD RNase_HI_like 1326 1419 - -
Vian1g03188 1871 SUPERFAMILY DNA/RNA polymerases 945 1279 IPR043502 -
Vian1g03188 1871 MobiDBLite consensus disorder prediction 439 461 - -
Vian1g03188 1871 Gene3D - 1371 1428 IPR036397 GO:0003676
Vian1g03188 1871 Gene3D Acid Proteases 539 674 IPR021109 -
Vian1g03188 1871 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 972 1056 - -
Vian1g03188 1871 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 973 1130 IPR000477 -
Vian1g03188 1871 SUPERFAMILY Acid proteases 567 658 IPR021109 -
Vian1g03188 1871 Pfam Integrase core domain 1585 1682 IPR001584 GO:0015074
Vian1g03188 1871 FunFam Transposon Tf2-6 polyprotein-like Protein 1141 1229 - -
Vian1g03188 1871 Pfam G-patch domain 733 773 IPR000467 GO:0003676
Vian1g03188 1871 Pfam Integrase zinc binding domain 1509 1566 IPR041588 -
Vian1g03188 1871 ProSiteProfiles Integrase catalytic domain profile. 1579 1740 IPR001584 GO:0015074
Vian1g03188 1871 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 199 1575 - -
Vian1g03188 1871 Gene3D - 1474 1567 - -
Vian1g03188 1871 Pfam Reverse transcriptase-like 1358 1418 IPR002156 GO:0003676|GO:0004523
Vian1g03188 1871 CDD RT_LTR 973 1131 - -
Vian1g03188 1871 SUPERFAMILY Ribonuclease H-like 1583 1746 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03188 Vian-Chr1 53181170 53187695 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03188 - - vun:114165194 2600.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03188 1 53181170 53187695 Vian1g03188 1 53181170 53187695 ECH