Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03078 ATGTCTATAACCCATAATCTCACCACTTCACTCTCTTCTACTTCTTCTGCTTTCTTAGCACCCTCTTCTTTCAATTCTAGGGGACATGTTTCATTGCCTGTGAAGAGCGTGGGCATTTGCAAATGCATTGCGACACCCGAGGCTGAGACTGGCTACAAGACAAGGGTCACTCGCAATCCAAATTTGGGAAAACTTCAAGCTGGGTATCTATTTCCTGAGAGGAATAAGGATAGGATTGAAATATTCACCCACAAGATCCAATGGAAATTGCTCGAGATGTGGAAGATGCTATGCAAGAATCACCCACAAGATCCAATGGAAATTGCTCGAGATGTGGAAGATGCTATGCAAGAATCAAGAATCATGACAGTAGGTGGATCATGTTGTAGCAATACCTTAAACTTTCGATATAATGGAGGGAGTGGGGTTGTATCATGGATTGAGACCTTGAAAAACACTAGTAATTCACAAGGGGAAAATGGTATGGGCAACACAACGAGGATGAGAATGCAAAGATCACAAGCATTATCAACTATTCAAGGATATAGTGGGTATGGTGCGGAACAAGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCAACATTTTACAGCGATCTTGGCATAGAAGAGGATGATATATTTGTGTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTCGGGTCAAATGTAAAAATGGCTGTACAAGACCCTTCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGCCTCTACCAGAAGGATGTTGAGAAGTTTGGAAACATTGAATACATGAGGTGTAGTCCGGAAAATGGTTTCTTCCCTGATTTATCTTCAATTTCTCGACCAGACATAATCTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCTGCAACAAGGGAACAACTGACCCAACTTGTTCAGTTTGCTAAGGACAACGGTAGTATAGTAATCCATGATTCAGCTTATGCAATGTATATTTCTGGTGACAACCCACGTTCCATCTTTGAAATTCCTGGAGCCAAGGAGGTTGCCATTGAGACGTCATCATTTAGCAAGTATGCTGGATTCACAGGAGTCCGATTAGGTTGGACTGTGATTCCAAAGGAGTTGCTGTTTTCTGATGGATTTCCTGTTGCCAGGGACTTCAACCGTATTGTATGCACTTGTTTCAATGGTGCATCAAATATTTCCCAGGCAGGTGGTCTGGCTTGCCTTTCACCAGAAGGTCTTAAGGCTATGGGAGAAGTTATTGGATTCTACAAAGAAAATACGAACATAATTGTGGAGACATTTGATTCTCTTGGATTCAAAGTGTATGGAGGAAAAGATGCACCATATGTGTGGGTTCATTTCCCTGGCAGAAGCTCATGGGATGTATTTGGTGAGATTCTTGAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTGTCAGGGTTAGTGCCTTTGGTCACAGGGAAAATGTCTTGGAGGCATGCAGAAGGTTCAAGCAGCTATACAAGTGA 1554 0.426 MSITHNLTTSLSSTSSAFLAPSSFNSRGHVSLPVKSVGICKCIATPEAETGYKTRVTRNPNLGKLQAGYLFPERNKDRIEIFTHKIQWKLLEMWKMLCKNHPQDPMEIARDVEDAMQESRIMTVGGSCCSNTLNFRYNGGSGVVSWIETLKNTSNSQGENGMGNTTRMRMQRSQALSTIQGYSGYGAEQGEKPLRSAIASTFYSDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVEKFGNIEYMRCSPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGSIVIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVARDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMGEVIGFYKENTNIIVETFDSLGFKVYGGKDAPYVWVHFPGRSSWDVFGEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03078 517 NCBIfam LL-diaminopimelate aminotransferase 174 514 IPR019942 GO:0008483
Vian1g03078 517 Gene3D - 170 416 IPR015421 GO:0003824
Vian1g03078 517 SUPERFAMILY PLP-dependent transferases 156 512 IPR015424 -
Vian1g03078 517 Gene3D Aspartate Aminotransferase, domain 1 417 513 IPR015422 GO:0003824
Vian1g03078 517 PANTHER AMINOTRANSFERASE 167 517 IPR019942 GO:0008483
Vian1g03078 517 CDD AAT_like 171 514 - -
Vian1g03078 517 FunFam LL-diaminopimelate aminotransferase, chloroplastic 402 513 - -
Vian1g03078 517 FunFam LL-diaminopimelate aminotransferase, chloroplastic 163 416 - -
Vian1g03078 517 Pfam Aminotransferase class I and II 172 512 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03078 Vian-Chr1 51285809 51295228 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03078 K10206 - gmx:100801405 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03078 1 51285809 51295228 Vian1g03078 1 51285809 51295228 ECH