Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03076 ATGATGGATTATCAGTATATTCTAGGAGGGATCGTGGCTTGTAGCTTCGCATTTTTCTATTTTGTGTATAGTTTTGGAGCAAAAAAGGTCACAGATTCAACTTCGATTCATGTAGAAAGTAATGAGTGCGAGAAGAAATCATCAGAAAATGGAACATTTTCACACCAGGCTGCAGAAAGTGCTGACATAATCATTGTGGGTGCAGGCGTTGCTGGTGCTGCTCTTGCTTACACGCTTGGAAAGGATGGACGCCGAGTACTTGTGATTGAAAGGGATTTGAGTGAACCTGACAGGATCGTGGGTGAATTGCTGCAACCTGGGGGATATCTGAAGTTAATTGAGCTGGGTCTTCAGGATTGTGTAAGCGAAATTGATGCTCAGCAAGTGTTTGGGTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTATCTTATCCCTTGGAAAAGTTTAGCTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCCTCATGTCTTCCTAATGTAAATTTAGAACAAGGAACTGTGACATCTCTAATTGAAGAAAAAGGAACTGTCATCGGGGTGCAGTACAAAACCAAAAGTGGACAAGAGTTCACAGCCAAGGCTCCCCTCACCATAGTATGTGATGGATGTTTTTCCAACCTTAGGCGTTCTCTTTGCAATCCTAAGGTTGACGTACCCTCTCATTTTGTTGGTCTAGTCTTGGAGAATTGCAATCTTCCATATGCAAATCATGGACACGTGATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAGTTACCATCCCTTGGCAATGGTGAAATGGCCAGTTATTTAAAAAGTGTGGTAGCTCCTCAGGTTCCTCCAGAGCTGTATACTTCATTTATAGCAGCAGTTGACAAAGGAAGCATAAGAACGATGCCAAATAGAAGCATGCCTGCCTCACCTCATCCCACACCTGGTGCCCTTCTAATGGGAGATGCCTTCAATATGCGTCACCCTTTAACAGGAGGAGGAATGACAGTGGCTTTATCTGACATTGCTGTGCTAAGGGATCTACTTAAACCCCTTAGGAATCTGCATGATGCTTCTGCTCTTTGCAGATACCTTGAGTCATTCTACACCCTACGCAAGCCAGTGGCATCCACAATAAACACACTAGCCGGGGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTTGATTACTTGAGCCTTGGTGGTGTTTTCTCTAATGGACCAATATCTCTGCTCTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTGCACTTCTTTGCGGTTGCTATATATGGTGTTGGACGCTTGCTCATACCATTTCCTTCTCCCAAACGGTTGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGGATCATATTCCCCATTATCAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCAGCAACTGTGCCTGCATATTACAGAGCCCCTCCTGTTCGTTGA 1578 0.4411 MMDYQYILGGIVACSFAFFYFVYSFGAKKVTDSTSIHVESNECEKKSSENGTFSHQAAESADIIIVGAGVAGAALAYTLGKDGRRVLVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVSEIDAQQVFGYALYKDGKNTKLSYPLEKFSSDVSGRSFHNGRFIQRMREKASCLPNVNLEQGTVTSLIEEKGTVIGVQYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMASYLKSVVAPQVPPELYTSFIAAVDKGSIRTMPNRSMPASPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIAVLRDLLKPLRNLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRLWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRAPPVR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03076 525 Gene3D - 54 441 IPR036188 -
Vian1g03076 525 Pfam Squalene epoxidase 211 484 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vian1g03076 525 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Vian1g03076 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Vian1g03076 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Vian1g03076 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Vian1g03076 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Vian1g03076 525 SUPERFAMILY FAD/NAD(P)-binding domain 61 436 IPR036188 -
Vian1g03076 525 PANTHER SQUALENE MONOOXYGENASE 13 523 IPR040125 GO:0004506|GO:0016126
Vian1g03076 525 FunFam Squalene monooxygenase 2 55 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03076 Vian-Chr1 51269191 51271954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03076 47 524 Miscellaneous Gene Families AT1G58440 78.706 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03076 K00511 - gmx:100808856 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03076 1 51269191 51271954 Vian1g03076 1 51269191 51271954 ECH