Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03071 ATGGCTTCCTCGGAGATCGAGGTGGTATCATCATCATCGTCGGTCTCCAAACCCAATGATCAGCCTCTTATCCTCGACGTCTTCACCGCCTCTGCTCACGGCGACTTCAACAAACTGAGAACCTTCGTCGAACAACACGGTGCCTCCGTCTCGGTTCCCGATGTTAGTGGCTATTACGCTCTTCAATGGGCCTCGCTTAACAACTTTCATGACATTGCGCACTATCTCATTCAGCATGGAGCGGATGTGAATGCTAAAGACAGCATGCAACAAACAGCATTGCATTGGGCAGCAGTTCGTGGTTCAACTGCGGCTGCTGATGTGCTTGTGGAGAATGGTGCTCAGATTGGAGCTGCTGACATAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGTCAGACATCTTTCTTAAATCACATTGTAGTAAAGTACCATACCGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCACTGGGCCGCATATAAGGGATTTGCTGACACAATCAGATTGCTTCTATTTAGAGATGCATGCCAAGGAAGACAAGATAAAGATGGCTGTACACCGTTGCACTGGGCTGCATTAAGAGGACATGCAGAGGCGTGCGCTGTGCTTGTACATGCAGGCACAAAGGAAGAATTGATGGTGAAGGACAATGCTGGACACACCCCTGTACAACTTGCATATGATAAAGGTCATCGACATGTCGCTCCTTTCCTTGTACACCCACAACTTTGCGAGTTGAGCCTAGATGAGCAAAAGCCCAATCTGTCAAATCAACAACGGGCTCATAGCAACAACTGGAAAGGGAAACTTTGCCGTGGGGTGGTGACAGATATTGGTTATGCTCCCATCTTGTTGTGTATTATGATCTTTCTCCTGATCCTCTTCATCAACTCAGTTATCGCTGCTCCTAACCTTGGAAAGATTACTGCTACTGCTGGACTTTGGGCATGGACAGCACTTTCCCTAGAAGCTGCTGCCCTGATTATGTTTTATAGGTGTAGTAGCAAAGATCCTGGTTATATAAAACGGCTGGGAGACTTGGGTACTCAAAGTGATACTGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGACAGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTACGATCTAAGCATTGCCCTACCTGTAAGCGATGTGTGGAACAGTTCGATCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGATTGCTCGAAATGTGACCACAAATGAACTAGCAAATTCTTCCCGCTATGATTATCTTCGTGGACCTGATGGGCGATTCAGAAACCCATATAACCATGGTTGTTGGAAGAATTGTGCTGACTTCCTTTCTCTGGGATATACAAATGATGATGAAATTGCTTGGCCTCGATTACAGCAGGTGGCAACTTGA 1446 0.4578 MASSEIEVVSSSSSVSKPNDQPLILDVFTASAHGDFNKLRTFVEQHGASVSVPDVSGYYALQWASLNNFHDIAHYLIQHGADVNAKDSMQQTALHWAAVRGSTAAADVLVENGAQIGAADINGYRAVHVAAQYGQTSFLNHIVVKYHTDFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDACQGRQDKDGCTPLHWAALRGHAEACAVLVHAGTKEELMVKDNAGHTPVQLAYDKGHRHVAPFLVHPQLCELSLDEQKPNLSNQQRAHSNNWKGKLCRGVVTDIGYAPILLCIMIFLLILFINSVIAAPNLGKITATAGLWAWTALSLEAAALIMFYRCSSKDPGYIKRLGDLGTQSDTEDPLLNIDLNSSSVWTGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGCWKNCADFLSLGYTNDDEIAWPRLQQVAT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03071 481 Gene3D - 142 247 IPR036770 -
Vian1g03071 481 SUPERFAMILY Ankyrin repeat 28 245 IPR036770 -
Vian1g03071 481 FunFam S-acyltransferase 143 250 - -
Vian1g03071 481 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Vian1g03071 481 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Vian1g03071 481 ProSiteProfiles Ankyrin repeat region circular profile. 156 177 - -
Vian1g03071 481 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Vian1g03071 481 Pfam Ankyrin repeat 57 87 IPR002110 GO:0005515
Vian1g03071 481 FunFam S-acyltransferase 12 142 - -
Vian1g03071 481 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Vian1g03071 481 ProSiteProfiles Ankyrin repeat region circular profile. 56 87 - -
Vian1g03071 481 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 6 419 - -
Vian1g03071 481 ProSiteProfiles DHHC domain profile. 380 418 - -
Vian1g03071 481 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Vian1g03071 481 SMART ANK_2a 56 85 IPR002110 GO:0005515
Vian1g03071 481 SMART ANK_2a 122 152 IPR002110 GO:0005515
Vian1g03071 481 SMART ANK_2a 224 254 IPR002110 GO:0005515
Vian1g03071 481 SMART ANK_2a 89 118 IPR002110 GO:0005515
Vian1g03071 481 SMART ANK_2a 189 218 IPR002110 GO:0005515
Vian1g03071 481 SMART ANK_2a 156 185 IPR002110 GO:0005515
Vian1g03071 481 Pfam DHHC palmitoyltransferase 380 419 IPR001594 GO:0016409
Vian1g03071 481 Pfam Ankyrin repeats (3 copies) 120 181 IPR002110 GO:0005515
Vian1g03071 481 Pfam Ankyrin repeats (3 copies) 187 246 IPR002110 GO:0005515
Vian1g03071 481 Gene3D - 4 141 IPR036770 -
Vian1g03071 481 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03071 Vian-Chr1 51175448 51186416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03071 91 260 Miscellaneous Gene Families AT2G31820 28.409 1.83e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03071 K20032 - gmx:100807263 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03071 1 51175448 51186416 Vian1g03071 1 51175448 51186416 ECH