Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02647 ATGGCGGGGGAGAAGAGTGTTGAGATGGTGGCATTGGAGTGTCTGGGGAAAGGGTTCGATATGGCCAGTGATTTTCGGTTGAGGTTTGCAAAGGGGATTGGTGGAGAGAGGTTAGTGGTGCTTGATGAACATAACAAGAGGGATATCTTGATTCCTGGAACTGGAGGAGTTACCATTAAAGCGGTTTCTGAAAATATTCGGTGTGATAAAGGGGATAGAATACGCTTCAAGTCTGATGTACTTGAATTCAACCAGATGTCTGAGTTGCTTAATCAGAAATCGACAGTGCAAGGGAAAGTTCCTTCTGGGTATTTTAATGCGCTTTTCGATTTGACTGGTGATTGGTTTCGTGATGCTGCTGACATCAAATACCTTGCTTTTGATGGGTATTTCATTTCACTCTACTATTTGCACCTCACTGCTTCTCCACTCATTCTGCAAGAAGAGGTAAAGAAGTCTGTTCCGGCTCAGTGGGATCCAGCTTCGTTGTCTAGGTTCATACAGACATATGGTACACACATAATAGTGGGTATGGCTGTAGGAGGTCAAGATGTAATCTGTGTCAAACAAAGGCATTCATCAAAAATTCCTCCTGGTGATTTAAGGAGACATTTAGAGGATCTTGGAGATTTTCTTTTCTCAGATGTGAGAAGCCCTTCTTTACTACAGGGGAAGACCGCAGATGGAAAACAGAAGGTCCCTGAGGTCTTTAACCGTGTGATGCAATCAAACACAATGCAGTTCACTAGTATTTCAGAAACATCAAGCAAGGATGGACTCACTATTATTTGTTCAAAAAGAGGAGGAGATATGTTCAAACACAGTCACTCAAATTGGCTTCAAACGGTGCCTTCTAACCCTGATGCAATCCTCTTCAAGTTTGTTCCTATTTCCTCACTTCTGACAGGAATTCCTGGAAGTGGATATCTTAGTCATGCAATCAATCTGTATCTACGTTACAAGCCTTCTCTTGATGATTTACAATACTTTTTGGAGTTTCAAATTCCGAGGCAATGGGCACCCATGTTTTGTGAGCTGCCACTCAGGCATCAGCGGAGAAAGACTGCTTCCCCTTCACTGCAATTTAGTTTCATGGGTCCGAAGCTTCATATCATCTCTACACAGGTGGTAAGTGAACAAAAACCTGTCGTTGGCATGCGCTTGTACTTGGAGGGAAGGAAATGTGATAGACTTGCTTTGCATATACATCATCTTTCAAGCCTTCCAAATAAAATGGTCCTCTCTTCAAGAAGCTCAACCTCAAGCATGCCGTCTATGTGGCGAGGATCTGATGATAATGATTCGAGTGATCAATTTCTGGAACGAATAAGATGGAAGAGATTCTCAAATGTGTGCACAGCAGTGGTTAAACATGACCCTAACTGGTTGAATAGTTCTGGAGGTGTTTATATTGTTACAGGTGCACAGCTCCTTAGCAAAGGAAGTTGGCCAAGGAATGTGCTTCACCTGCGTCTTCTCTTCACTCATATACCCAATTGCAGTATCCGGAAGTTGGAGTGGTCTGCTGCTCCAGAGGCTTCAAGAAAAACATCTTTTCTAACAAATTTGAGTACAACATTTTCATTCACACAGCATGGCAACACTGGTCCTCCAAAGCAGGCTCCAACTGCTCTCAATTCTGGTGTTTATCCAGATGGTCCACCTGTGCCAGTTCGCTCTGGTAAACTTCTTAAATACGTGGAGACAGCTGAGGTGGTGCGAGGTCCACATGATGCTCCTGGCCATTGGTTGGTAACTGCTGCAAAGCTTGTGACTGATGGTGGTAAGATTGGATTACAGGTGAAGTTTGCATTACTTGATTATTGGTGA 1830 0.4333 MAGEKSVEMVALECLGKGFDMASDFRLRFAKGIGGERLVVLDEHNKRDILIPGTGGVTIKAVSENIRCDKGDRIRFKSDVLEFNQMSELLNQKSTVQGKVPSGYFNALFDLTGDWFRDAADIKYLAFDGYFISLYYLHLTASPLILQEEVKKSVPAQWDPASLSRFIQTYGTHIIVGMAVGGQDVICVKQRHSSKIPPGDLRRHLEDLGDFLFSDVRSPSLLQGKTADGKQKVPEVFNRVMQSNTMQFTSISETSSKDGLTIICSKRGGDMFKHSHSNWLQTVPSNPDAILFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSLDDLQYFLEFQIPRQWAPMFCELPLRHQRRKTASPSLQFSFMGPKLHIISTQVVSEQKPVVGMRLYLEGRKCDRLALHIHHLSSLPNKMVLSSRSSTSSMPSMWRGSDDNDSSDQFLERIRWKRFSNVCTAVVKHDPNWLNSSGGVYIVTGAQLLSKGSWPRNVLHLRLLFTHIPNCSIRKLEWSAAPEASRKTSFLTNLSTTFSFTQHGNTGPPKQAPTALNSGVYPDGPPVPVRSGKLLKYVETAEVVRGPHDAPGHWLVTAAKLVTDGGKIGLQVKFALLDYW 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02647 609 Pfam MAC/Perforin domain 105 317 IPR020864 -
Vian1g02647 609 MobiDBLite consensus disorder prediction 530 549 - -
Vian1g02647 609 SMART MACPF_8 122 319 IPR020864 -
Vian1g02647 609 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 331 IPR020864 -
Vian1g02647 609 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 6 608 IPR044663 GO:0006952|GO:0012501|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02647 Vian-Chr1 39103687 39108319 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02647 - - gmx:100781070 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02647 1 39103687 39108319 Vian1g02647 1 39103687 39108319 ECH
Vian2g03209 2 52437720 52442581 Vian1g02647 1 39103687 39108319 PCT