Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02041 ATGGAAGAATGGAACATGCTTGCCGCTGATTGCGTGGTCATATCATGCTGCTGCCAGTGCTTGCTGCTGCAAATTCTTGTCTTTCTCATGCTGAAGCTTCCCTGGAAGCTCATCAGGAAAACGAGGGAATATGCTAAGAAAAAGCTTCGTCAAAGGAAGGGAAACGATGATAAGAAGAAGATAGAATCGGCTTGTTATGAAGATGTTCTTGTGAGAATTCATGAACAGTCTTTTAGAATTCAAGGAGAGATGACAGTGAGAGATGGTGAAGGTTTCGGTTGTGGTGGTTGCATGGATGAAGTTGAAAAGATCATGGAGGAGCTATATCAAAAGGGAGAGTTTGGATTCGGGAGCTTCTGGGGTAGGGAAGAACCATGCGGATTTGCTGTTCCTACAAAAATTCACAATGATCCTAATCTTGAAAGCGACCAAATCAAACAACTCAGCGACATATTCAAACGCTTCGACATGGACTCCGACGGCAGCCTCACGCACCTCGAGCTGGCAGCGCTCCTCCGGTCCCTCGGAATCAAACCCACCGGCGATGAGATATACGCGCTGCTCTCCAACATGGACGAAAACGGCAACGGATACATCGAGTTCGACGAGCTCCTGCACGCGATCATGCCCGACCTCAACGAGCAGGTTCTCATCAACCAGGAGCAGCTGCTCGAGGTCTTCCGCTCCTTCGACCGCGACGGCAACGGCTACATCACGGCGTCGGAGCTCGCCGGCTCCATGGCCAAGATGGGCCATCCCCTCTCCTACAACGAGCTCACCTCTATGATGGCCGAGGCCGACAGCAACGGCGACGGTGTCATTAGCTTCAACGAGTTCGCCACCCTCATGGCCAAATCTGCCGCCGATTTTCTCGGCCTCCATGTCGCCTAG 891 0.5174 MEEWNMLAADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKKKIESACYEDVLVRIHEQSFRIQGEMTVRDGEGFGCGGCMDEVEKIMEELYQKGEFGFGSFWGREEPCGFAVPTKIHNDPNLESDQIKQLSDIFKRFDMDSDGSLTHLELAALLRSLGIKPTGDEIYALLSNMDENGNGYIEFDELLHAIMPDLNEQVLINQEQLLEVFRSFDRDGNGYITASELAGSMAKMGHPLSYNELTSMMAEADSNGDGVISFNEFATLMAKSAADFLGLHVA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02041 296 ProSitePatterns EF-hand calcium-binding domain. 267 279 IPR018247 -
Vian1g02041 296 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Vian1g02041 296 CDD EFh 222 284 IPR002048 GO:0005509
Vian1g02041 296 ProSitePatterns EF-hand calcium-binding domain. 231 243 IPR018247 -
Vian1g02041 296 Gene3D - 137 290 - -
Vian1g02041 296 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Vian1g02041 296 SUPERFAMILY EF-hand 132 284 IPR011992 -
Vian1g02041 296 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Vian1g02041 296 CDD EFh 147 209 IPR002048 GO:0005509
Vian1g02041 296 ProSiteProfiles EF-hand calcium-binding domain profile. 218 253 IPR002048 GO:0005509
Vian1g02041 296 ProSiteProfiles EF-hand calcium-binding domain profile. 254 289 IPR002048 GO:0005509
Vian1g02041 296 SMART efh_1 147 175 IPR002048 GO:0005509
Vian1g02041 296 SMART efh_1 258 286 IPR002048 GO:0005509
Vian1g02041 296 SMART efh_1 183 211 IPR002048 GO:0005509
Vian1g02041 296 SMART efh_1 222 250 IPR002048 GO:0005509
Vian1g02041 296 FunFam Probable calcium-binding protein CML16 137 289 - -
Vian1g02041 296 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Vian1g02041 296 Pfam EF-hand domain pair 221 283 IPR002048 GO:0005509
Vian1g02041 296 Pfam EF-hand domain pair 147 208 IPR002048 GO:0005509
Vian1g02041 296 PANTHER CALCIUM BINDING PROTEIN 199 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02041 Vian-Chr1 24590377 24592042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02041 142 296 EF-hand Containing Proteins AT3G25600 78.710 1.48e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02041 K13448 - gmx:100797705 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02041 1 24590377 24592042 Vian1g02041 1 24590377 24592042 ECH