Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01858 ATGCAAGACATGTGGAATGTTCCTCCGGGTTTTATACCCTCCAAATCTGCACCTTCTTCTCCTGCGAAGCCTCTCGGAGCAGTTCTCAGAACGCGCTCTGAGTCCTTTCATGTCACCCACAAGGTCCCGGTTGGTGACACTCCTTATGTCAGAGCAAAAAATGTTCAGTTGGTGGATAAGGATCCAGAGAAAGCAATTCCGCTGTTTTGGGCAGCCATTAATGCGGGAGATAGGGTGGACAGTGCTTTGAAAGATATGGCTATTGTCATGAAGCAGCAAAATCGGGCTGGAGAAGCCATTGAAGCCATTAAATCCCTTCGAAGTAGATGTTCAGATCAAGCCCAAGAATCTCTTGATAATATCCTCTTGGATCTTTACAAGAGGTGTGGAAGACTTGATGACCAAATAGCCCTCTTGAAGCACAAGTTGTACTTAATTCAACAAGGGTTGGCATTCAATGGTAAGCGCACAAAGACTGCGAGATCTCAAGGGAAAAAGTTTCAAGTTTCTGTTGAGCAAGAAGCCACGAGATTGCTGGGAAACTTGGGTTGGGCACTGATGCAGCAGAACAACTACATAGAAGCAGAAGAGGCTTATCGCCGGGCGCTGTCTATTGCTCCTGACAACAATAAGATGTGCAATCTGGGCATTTGTTTGATGAAGCAAGGAAGAATTGGTGAAGCAAAAGAGACACTGTACCGTGTAAAGCCTGCAGTTATGGATGGCCCTAGAGGCTCAGATTCTCACTTGAAAGCCTATGAAAGGGCACAACAGATGCTGAAAGACCTTGAATCTGAGATGATGAATAAGGGAGTCGATAGGATTGAACAAAGCAGGCTCTTTGAGGCCTTTTTAGGTTCTTCATCAATATGGCAACCCCAGCCTTGCAAGGATCACCACACAACCTTGCCAGCAGCTACAAATTCATCCAGAATTCAAGATGATTTTGCTGATGAGAACATCAATTCCAACACAATAACCAAAAATCACACAGCACTGCCACCACCTAAAGGTACCACTACTACTACCAACAAACAAACTGTTACCATGTTGGGGAACTCACTCAATGTTGCAGCTCCTCCCTTTTATGCATCAAAATCCATGCTGAGAGAACCATTTGAGAACCAGTTCTCGGAGACCCTTAAGAGAACAAGGTCTGGAAACTCTGCAGGGTCCATGAGAGTGGTTAGTGATGTGAGGGACAGGGACAGCAGCAACAAGTTGCAAGTGGAATTAGAGGTGTCAGTGCCAGAGAACAAAACAAGAAGGCTCTCATCAGAGGATAGTCAGAAGAACAAGTTAACAGATATGTTACCTGATGATGATGACTTTGAAGAGGCGATTCTTGCTGCAATTTTGGGACCTTCCAATGATAATAAAGCTACTGAGACAAGCAGAACTTTGCAGAGGAATAATGACAAGAGGCTTAAGGTTTTTAAGGATATTACGCTGTCTCTGAGTCCAAGAGCTTGA 1473 0.4467 MQDMWNVPPGFIPSKSAPSSPAKPLGAVLRTRSESFHVTHKVPVGDTPYVRAKNVQLVDKDPEKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAGEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGSDSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHTTLPAATNSSRIQDDFADENINSNTITKNHTALPPPKGTTTTTNKQTVTMLGNSLNVAAPPFYASKSMLREPFENQFSETLKRTRSGNSAGSMRVVSDVRDRDSSNKLQVELEVSVPENKTRRLSSEDSQKNKLTDMLPDDDDFEEAILAAILGPSNDNKATETSRTLQRNNDKRLKVFKDITLSLSPRA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01858 490 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Vian1g01858 490 ProSiteProfiles TPR repeat region circular profile. 176 209 - -
Vian1g01858 490 PANTHER PROTEIN POLLENLESS 3-LIKE 2 14 484 IPR044961 -
Vian1g01858 490 MobiDBLite consensus disorder prediction 419 438 - -
Vian1g01858 490 Coils Coil 246 273 - -
Vian1g01858 490 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Vian1g01858 490 SUPERFAMILY TPR-like 57 283 IPR011990 GO:0005515
Vian1g01858 490 SMART tpr_5 176 209 IPR019734 GO:0005515
Vian1g01858 490 MobiDBLite consensus disorder prediction 1 25 - -
Vian1g01858 490 Gene3D Tetratricopeptide repeat domain 54 237 IPR011990 GO:0005515
Vian1g01858 490 MobiDBLite consensus disorder prediction 380 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01858 Vian-Chr1 22044751 22046732 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01858 - - gmx:100788369 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01858 1 22044751 22046732 Vian1g01858 1 22044751 22046732 ECH