Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01854 ATGAGAAAGCTTGTGAATGCGGGGCAGCTAGAGATCATAAACGGTGGTTGGTGCATGCACGATGAAGCTGCAACTCACTACATAGACATGATTGATCAAACCACTTTGGGCCATCGATTTATCAAGGATGAGTTTAACAAGACTCCCACCGTTGGATGGCAGATTGATCCATTTGGACACTCTGCTGTGCAGGCTTACCTTCTTGGAGCTGAGCTTGGGTTTGATTCTGTACATTTTGCAAGAATTGATTATCAAGACAGAGCTAAGCGCAAAGCTGATAAGTCTCTTGAAGTTGTTTGGCGTGCCTCCAAAACATTTGGTTCTTCTGCTCAGATTTTTGCCAATGCTTTCCCTGTTCATTACAGTGCTCCAAATGGTTTCAACTTTGAAGTCAATAATGCTGATGTTAATGTTGTTCCAGTGCAGGATGATCCTCTTCTTTTTGACTACAACGTTGAACAACGTGTCAAAGACTTTATTGAAGCTTCCACTACCCAAGCAAATGTGACGAGGACAAACCATATAATGTGGACAATGGGTGATGATTTCCAGTACCAATATGCAGAGTCTTGGTTCAAGCAAATGGATAAACTAATTCATTATGTTAATAAGGATGGTAGAGTAAATGCTTTGTATTCCACTCCATCTATTTACACCAATGCCAAAAATGCTGCTAATCAAACTTGGCCACTGAAAACTGATGATTACTTCCCGTATGCTGATAGTGCTAATGCTTATTGGACTGGCTATTTCACGAGTCGCCCAGCCTTAAAGCGATATGTTAGGATGACAAGTGGATACTATTTGGCAACGCGTCAACTTGAATTTTTTGCTGGAAAGCAATCAGCTAAATACAATACTTTCGGTCTTGGAGATGCTCTAGGAATTGCACAACATCATGATGCTGTCAGTGGCACTGCCAAACAGCATACAACCAATGACTATGCCAAACGACTGGCTATTGGAGTCTCTGAGGCTGAAGCAGTTGTTAGTTCTACTTTGGCTTGTCTTACTAGTAAGAAATCAAGTGGTCAATGTTCAGCACCTGCATCGGCTTTTGCCCAGTGTCAATTGTTAAATATCAGTTACTGCCCTCCTACAGAAGATAACATTCCAGACGCTAAGAGTTTGGTAGTTGTGGTGTATAATCCACTTGGATGGAAACGTACTGATATCGTCAAAATACCAGTTAATGATGCTCATCTTGTTGTCCAAGACTCTCTGGGCAATAATATTGAAGTACAATATGTGGATGTGGATGATGTTACAGCAAATTTAAGAAATTTCTATGTAAAGGCTTATTTGGGGGTGTCACCAAAACAAGCCCCAAAGTACTGGCTTCTGTTTCAGGCGTCAGTACCTCCACTTGGATGGAGCACGTACTTCATTTCTAAAGCAACGGGAACAGGGTCCAAAACAAAAAACCTATCTAACCTCGGCAGTCAGAGAGGTGACACCATTGTCATTGGGCCCGGAAATTTAAAGATGTCCTTTTCCTCAACCTCTGGGCAACTCAAAAGGATGTATAATTCTAGAACTGGAGTTGATATACCTATTCAGCAAAGCTACCTCTATTATGGATCCAGTGAGGGTGATAGTGATCCTCAGGCTTCTGGTGCGTATATATTCCGGCCTAATGGATCCCCTCCAACTATCATTTCAAGATCAGTGCCCGCCAAGGTAATCCGCGGACCACTAGTTGATGAAGTTCATCAGAAATTTAGCTCTTGGATTTATCAGGTTACTAGGCTTTACAAAGATAAAGACCACGCTGAAGTCGAATTCACTATTGGTCCAATTCCTACTGATGATGGAGTTGGAAAAGAGGTGATCACAAGAATGACAGCAAATATGGTCACAAACAAGGAGTTTTATACTGATTCCAACGGCAGAGATTTTCTCAAACGAGTTCGAGATCATAGGGATGATTGGCCCCTTCAAGTAACTCAACCAGTTGCAGGAAACTATTACCCACTCAATCTTGGAATTTATACCAAGGATAAGAAATCTGAGTTCTCAATCTTAGTTGATCGTGCCACTGGTGGGGCTAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGGCGTATTCTTCACGATGATGGTCGAGGCGTTGGGGAAGCACTCGATGAACAAGTTTGCGTGAACAATAACAAAACATGTGAAGGACTAACAGTCAGAGGAAATTATTATATCAGCATAGACAAACTTGGGGCTGGTGCACGCTGGCGCCGTACAACTGGTCAAGAAATCTATTCGCCATTCTTATTGGCTTTTACACATGAGAACTTGGAAAGTTGGAAGTCCTCACATTGGACCAAGGGAACGATCCTGGACCCAAATTACAGCCTGCCCCCGAATGTAGCTCTGATAACTCTTGAGGAGTTGGATGGTGGAGTTGTGCTTCTCCGTTTGGCACATCTATATGAGCCAAGTGAAGATGCCGAGTATTCAACTCTAACCAAAGTAGAATTGAAGAAGCTGATTGCCAAGAAAACGATAAAGGAGTTGAAGGAGGTAAGTTTATCAGCTAACCAAGAGAAGTCAGAAATAAAGAAAATGACATGGAAGGTTGAAGGAGACAATGGACAAGAACCTCAAGGTCTTAGGGGTGGCCCTGTCAACAATAATTTGGTTGTTGAGCTTGGCCCCATGGAAATACGAACTTTCCTATTGAAACTTTCAAATACCCCAAGTCATCATTGA 2709 0.4223 MRKLVNAGQLEIINGGWCMHDEAATHYIDMIDQTTLGHRFIKDEFNKTPTVGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRAKRKADKSLEVVWRASKTFGSSAQIFANAFPVHYSAPNGFNFEVNNADVNVVPVQDDPLLFDYNVEQRVKDFIEASTTQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTNAKNAANQTWPLKTDDYFPYADSANAYWTGYFTSRPALKRYVRMTSGYYLATRQLEFFAGKQSAKYNTFGLGDALGIAQHHDAVSGTAKQHTTNDYAKRLAIGVSEAEAVVSSTLACLTSKKSSGQCSAPASAFAQCQLLNISYCPPTEDNIPDAKSLVVVVYNPLGWKRTDIVKIPVNDAHLVVQDSLGNNIEVQYVDVDDVTANLRNFYVKAYLGVSPKQAPKYWLLFQASVPPLGWSTYFISKATGTGSKTKNLSNLGSQRGDTIVIGPGNLKMSFSSTSGQLKRMYNSRTGVDIPIQQSYLYYGSSEGDSDPQASGAYIFRPNGSPPTIISRSVPAKVIRGPLVDEVHQKFSSWIYQVTRLYKDKDHAEVEFTIGPIPTDDGVGKEVITRMTANMVTNKEFYTDSNGRDFLKRVRDHRDDWPLQVTQPVAGNYYPLNLGIYTKDKKSEFSILVDRATGGASIKDGEVELMLHRRILHDDGRGVGEALDEQVCVNNNKTCEGLTVRGNYYISIDKLGAGARWRRTTGQEIYSPFLLAFTHENLESWKSSHWTKGTILDPNYSLPPNVALITLEELDGGVVLLRLAHLYEPSEDAEYSTLTKVELKKLIAKKTIKELKEVSLSANQEKSEIKKMTWKVEGDNGQEPQGLRGGPVNNNLVVELGPMEIRTFLLKLSNTPSHH 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01854 902 FunFam Alpha-mannosidase 207 287 - -
Vian1g01854 902 SMART Alpha_mann_mid_2 245 319 IPR015341 GO:0004559|GO:0006013
Vian1g01854 902 Pfam Glycosyl hydrolases family 38 N-terminal domain 2 240 IPR000602 GO:0004559|GO:0006013
Vian1g01854 902 Gene3D - 486 754 - -
Vian1g01854 902 Pfam Alpha mannosidase middle domain 245 337 IPR015341 GO:0004559|GO:0006013
Vian1g01854 902 Gene3D Glycoside hydrolase family 38, central domain 209 288 IPR037094 GO:0004559|GO:0006013
Vian1g01854 902 PANTHER ALPHA-MANNOSIDASE 2 897 - -
Vian1g01854 902 Gene3D Glycoside hydrolase family 38, central domain 289 343 IPR037094 GO:0004559|GO:0006013
Vian1g01854 902 Pfam Glycosyl hydrolases family 38 C-terminal domain 490 704 IPR011682 GO:0004559|GO:0006013
Vian1g01854 902 SUPERFAMILY Families 57/38 glycoside transferase middle domain 245 344 IPR028995 -
Vian1g01854 902 FunFam Alpha-mannosidase 355 466 - -
Vian1g01854 902 Gene3D Glycoside hydrolase 38, N terminal domain 1 208 IPR027291 -
Vian1g01854 902 FunFam Alpha-mannosidase 288 343 - -
Vian1g01854 902 Gene3D - 366 483 IPR013780 -
Vian1g01854 902 FunFam Alpha-mannosidase 774 897 - -
Vian1g01854 902 SUPERFAMILY Glycoside hydrolase/deacetylase 1 241 IPR011330 GO:0005975
Vian1g01854 902 Gene3D - 777 898 - -
Vian1g01854 902 SUPERFAMILY Galactose mutarotase-like 353 895 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vian1g01854 902 FunFam Alpha-mannosidase 488 754 - -
Vian1g01854 902 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 788 892 IPR041147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01854 Vian-Chr1 22001759 22010056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01854 4 843 Glycoside Hydrolase AT3G26720 59.834 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01854 K01191 - gmx:100775419 1663.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01854 1 22001759 22010056 Vian1g01854 1 22001759 22010056 ECH