Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01812 ATGTTGCTTCTCATTTTCTCATTTCTTACCTCAATTTCGGAGCCATGTCACGTGGTGGACAAAGAAGCATTACTAGAATTCAAGAGCAGGATCATCTCTGACCCTTCAAAACTGCTAGATTCCTGGACACCTTCATCTGACTGCTGCCACAGTTGGGAAGGCATCGCATGTGGTTCCACTGGCAGGGTCATCAACCTTACTAGAATCGGCGTCGTGTTCGACGTCGATGAAATCCCTCTCGAAACCTACATGTCAGGAACCTTGTCACCTTATCTTGGAAACTTGTCTGCTTTGCAAGTTTTGGACCTTAGCAATCTGAAGCAGTTGCATGGTCCAATACCATCACAACTCGCCAAGCTATCCCACTTGACTAAACTTTTTCTCTATTCAAACCAGCTCTCAGGTGGGGTACCCGCGTCTTTCGAAAACCTTTCACGGCTTCAGAGTTTGTACCTCGATAACAACCAATTGTTTGGTAATGTTCCTTTTTCTGTCTTTGCCTCCTTCAAGTCTCTTTTACAACTTGGTCTATCCGGGAACAGGCTTTCTGGGGCGATTCCTTCTTCCGTTGGAAGAATGGTATTTCTCACTAGGCTTGACCTTCATCAAAACAATTTTCATGGAAACATTCCTTCTAGCATTGGAAATCTTGTAAACCTCAAGGACTTGGATTTCTCTTATAATCAGATTAGTGGAAGAATCCCAGAGTCAATCGGGAGACTTTCACAATTGGTTTTTCTGGACCTCATGCATAATAATCTCTCAGGAAACCTCCCTTTTTCTATTGGGGATTTAAGTTCTCTCAAGTTTTGCAGTTTAGCAGCGAACAAGCTAACAGGCGTTTTGCCTTATTCCATTGGAAAACTCGGCAATGTGCGTAGGGTAATCCTTGAGAACAATAAACTCACTGGGATGTTACCTTCCACCATTGGCGATCTAGCTAGTTTAACTGATTTATTTCTCGCAAACAATGAATTCAGTGGCAAAATTCCACCTTCCTTTGGCAATTTAGTCAACCTGCAAACACTGGATTTCTCAAGAAACCAATTTTCTGGTCTACTTCCCTCTCAACTTGCTAAACTACAGAGTTTGCAAACTTTAGACTTGTCATTCAACCCATTAGGACTAGCCAAAGTACCCAAGTGGATATCCAAGTTAAGAGTTTTTCAGTTGAAACTGGCCCAGACAGGGATCAATGGTCAACTTCCAAAGTGGCTTGCATATTCATCAGTGACAACCCTTGATTTGTCAAGCAATGCATTGACGGGGAAATTGCCATGGTGGATTGGAAACATGACTCGCCTTTCCTTCCTGAACCTGTCAAACAACCAGTTCCACTCGTCAATCCCAGTGGCATTCATGGGCCTTTCTTCTCTGATGGACCTTGACCTCCATTCCAATAAGCTCACAGGATCCCTGAGACCGGTGTTTGAGAAAGAGGTTCAATTTTCGCTAGGCCATTTGAACTCCGTCGACCTATCTAACAACAAGTTTTGCGGTCCCATTGACGACAACATTGGACAAAAGGCCTCAATGAGTTCAATCAAATCTCTTGCATTGTCACACAACCCGTTGGGAGGATCTATTCCAAAGTCAATTGGGAAACTGAGAGAATTGGAGATTCTGGACCTTGAAGACAGTGGACTCTCAGGGAATATACCTGAAGAGCTTGGTGATGCCGAAACGTTAACAAAGATTAATATTTCAAAGAACAAATTAAGTGGCAACATACCAGAGAAGGTCCTAAATTTGAAGAAACTTGAAGAGTTCGATGTGTCAAGAAACAGACTCAGAGGGAGGATCCCTCCACATAAGGCCATGTTTCCTATTTCAGCTTTTGTGGGTAATCGTGGATTGTGTGGAAGACCTCTTCCTCCTTGTAAACTTCGTTATAGATAA 1899 0.4302 MLLLIFSFLTSISEPCHVVDKEALLEFKSRIISDPSKLLDSWTPSSDCCHSWEGIACGSTGRVINLTRIGVVFDVDEIPLETYMSGTLSPYLGNLSALQVLDLSNLKQLHGPIPSQLAKLSHLTKLFLYSNQLSGGVPASFENLSRLQSLYLDNNQLFGNVPFSVFASFKSLLQLGLSGNRLSGAIPSSVGRMVFLTRLDLHQNNFHGNIPSSIGNLVNLKDLDFSYNQISGRIPESIGRLSQLVFLDLMHNNLSGNLPFSIGDLSSLKFCSLAANKLTGVLPYSIGKLGNVRRVILENNKLTGMLPSTIGDLASLTDLFLANNEFSGKIPPSFGNLVNLQTLDFSRNQFSGLLPSQLAKLQSLQTLDLSFNPLGLAKVPKWISKLRVFQLKLAQTGINGQLPKWLAYSSVTTLDLSSNALTGKLPWWIGNMTRLSFLNLSNNQFHSSIPVAFMGLSSLMDLDLHSNKLTGSLRPVFEKEVQFSLGHLNSVDLSNNKFCGPIDDNIGQKASMSSIKSLALSHNPLGGSIPKSIGKLRELEILDLEDSGLSGNIPEELGDAETLTKINISKNKLSGNIPEKVLNLKKLEEFDVSRNRLRGRIPPHKAMFPISAFVGNRGLCGRPLPPCKLRYR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01812 632 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 11 304 - -
Vian1g01812 632 Pfam Leucine rich repeat N-terminal domain 20 57 IPR013210 -
Vian1g01812 632 FunFam Leucine-rich receptor-like protein kinase family protein 211 308 - -
Vian1g01812 632 Pfam Leucine rich repeat 333 374 IPR001611 GO:0005515
Vian1g01812 632 Pfam Leucine rich repeat 196 254 IPR001611 GO:0005515
Vian1g01812 632 Pfam Leucine rich repeat 97 157 IPR001611 GO:0005515
Vian1g01812 632 Pfam Leucine rich repeat 410 469 IPR001611 GO:0005515
Vian1g01812 632 Gene3D Ribonuclease Inhibitor 18 186 IPR032675 -
Vian1g01812 632 SMART LRR_typ_2 432 455 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 289 312 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 584 615 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 337 360 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 485 509 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 144 168 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 313 336 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 169 193 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 217 241 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 361 386 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 120 143 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 512 536 IPR003591 -
Vian1g01812 632 SMART LRR_typ_2 456 479 IPR003591 -
Vian1g01812 632 Gene3D Ribonuclease Inhibitor 284 382 IPR032675 -
Vian1g01812 632 SMART LRR_sd22_2 584 612 - -
Vian1g01812 632 SMART LRR_sd22_2 217 243 - -
Vian1g01812 632 SMART LRR_sd22_2 361 378 - -
Vian1g01812 632 SMART LRR_sd22_2 120 146 - -
Vian1g01812 632 SUPERFAMILY L domain-like 276 603 - -
Vian1g01812 632 Gene3D Ribonuclease Inhibitor 383 510 IPR032675 -
Vian1g01812 632 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Vian1g01812 632 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 353 630 - -
Vian1g01812 632 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 114 210 - -
Vian1g01812 632 Gene3D Ribonuclease Inhibitor 512 627 IPR032675 -
Vian1g01812 632 SUPERFAMILY L domain-like 29 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01812 Vian-Chr1 21454995 21456893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01812 2 629 Receptor kinase-like Gene Family AT4G08850 33.676 1.90e-90 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01812 - - gmx:102664464 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01812 1 21454995 21456893 Vian1g01812 1 21454995 21456893 ECH