Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01810 ATGCTCTCTCTCACGCTCACTTCCTCTCACTTTCACCTTTTTCTCACTCTCTCACTGTTCCTAACATCATTCGTTACCGATTCAGCCACGCATTGGAGCGACACCCAGCTTCTCAAGGAACTAAAGAACAACCTTAACCCTGTTTCCATTACCCCAGGCTCCTGCATCTTCTCCTGGGACTTCTCCTATGATCCCTGCGACAACCTCTTCACTGACAAGTTCACCTGCGGCTTCAGGTGCGACGCCGTCGTTTCGGGAACCACTCGCCTCACCGAACTCACACTCGATCCCGCTGGTTACTCCGGCACGCTCTCCGCCACCTGGAACCTCCCCTACCTCCAAACTCTCGACGTCTCAAACAACTTCTTCTCAGGCCCAATCCCCGATTCCTTCTCCAACCTCACTCGGTTAACTCGACTCGGTTTATCGAAAAACTCCCTCACCGGAACTATACCCTCTTCCTTATCTTCCCTCTCTAACCTTCAAGAGCTTTACCTCGACAACAACAACCTCCAAGGACCAATCCCCGTCACTTTTAACCGCCTCACCAACCTTAAACGCCTCGAAATGCAGTCCAACAAGCTAAACGGTGTCCTTCCCAGTTTGAGCTCTCTCAACAATCTTTACTACTTGGACCTAAGTTTCAATCTTTTCACCGGACGGTTCCCCTCCTCCCTGCCGGAATCTCTGGTCCAGATTTCAATGCGGAACAACAGCTTAAGTGGCGCGTTGGAACCCGAATCTCTGAGGAACTTGAACTACTTGGAAGTAGTGGATTTGACTGCCAACAGGTTAAGCGGTGCCGTTCCGTTTGCGCTGTTCGAGCTTCCCTCGTTGCAGCAGGTGGCGCTCTCTTTCAACGAGTTCTCGCACCTGGAAGCGCCTTACGCTTTGGAAATGCATAGCGGAATTATAGCGGTTGATCTGAGCAACAACGAGCTTGGGGGGTTTCTGCCGTTGTTCCCGGCGTTGATGCCGAGGCTTTCGGCTCTGTCGTTGGAGAACAATAAGTTCGTGGGAATGATTCCGACCCAGTACGCGTTGAAGACAGTTTTCCCCGAGGCTGGGATAGCTCCGTTCGAGAGGCTTTTGTTGGGGGGAAACTACTTGTTTGGAGCTATTCCGAGTCCTCTAATGGCGCTTCAACCGGGTTCTGCCATGGTGAGGCTTGTGGATAATTGCTTGTATAGGTGTCCTATCAGTTTCTTCTTTTGTCAGGGAGGTCAACAAAAGTCATTTGAAGAATGTAAAAGATTTAGCCGCTTCATTCCCTAG 1275 0.509 MLSLTLTSSHFHLFLTLSLFLTSFVTDSATHWSDTQLLKELKNNLNPVSITPGSCIFSWDFSYDPCDNLFTDKFTCGFRCDAVVSGTTRLTELTLDPAGYSGTLSATWNLPYLQTLDVSNNFFSGPIPDSFSNLTRLTRLGLSKNSLTGTIPSSLSSLSNLQELYLDNNNLQGPIPVTFNRLTNLKRLEMQSNKLNGVLPSLSSLNNLYYLDLSFNLFTGRFPSSLPESLVQISMRNNSLSGALEPESLRNLNYLEVVDLTANRLSGAVPFALFELPSLQQVALSFNEFSHLEAPYALEMHSGIIAVDLSNNELGGFLPLFPALMPRLSALSLENNKFVGMIPTQYALKTVFPEAGIAPFERLLLGGNYLFGAIPSPLMALQPGSAMVRLVDNCLYRCPISFFFCQGGQQKSFEECKRFSRFIP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01810 424 SMART LRR_typ_2 158 181 IPR003591 -
Vian1g01810 424 SMART LRR_typ_2 134 157 IPR003591 -
Vian1g01810 424 SMART LRR_typ_2 110 133 IPR003591 -
Vian1g01810 424 SMART LRR_typ_2 276 300 IPR003591 -
Vian1g01810 424 SMART LRR_typ_2 182 205 IPR003591 -
Vian1g01810 424 FunFam Nuclear pore complex protein NUP107 33 201 - -
Vian1g01810 424 Gene3D Ribonuclease Inhibitor 33 200 IPR032675 -
Vian1g01810 424 Gene3D Ribonuclease Inhibitor 201 417 IPR032675 -
Vian1g01810 424 SUPERFAMILY L domain-like 54 400 - -
Vian1g01810 424 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 11 417 - -
Vian1g01810 424 Pfam Leucine rich repeat 111 171 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01810 Vian-Chr1 21435916 21437190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01810 111 381 Receptor kinase-like Gene Family AT3G11080 29.831 2.14e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01810 - - gmx:100787530 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01810 1 21435916 21437190 Vian1g01810 1 21435916 21437190 ECH