Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01798 ATGAAGTTCTATTCCCGCTTCAAACACGTATCCCATCTCCTTCAAACCCTAACTCCACATCAAAACCCTCCCCTCGCTTCCGCGCGGATCTCGATCTTACCCAACGCGCAACCCCTACCACGACCTTCCTACGCGCGTGGCTACTGCGTCGCGTCGCAGTCGCACACTTCGGAGAAGGTATCGGCGATCGTAGACGAAGTGATGGGACTGACATTACTTGAAGTGATGGACCTGGTGGAGGTGATGCGCGAAAAGCGCGGTGTCAACGAGCTTCCGATCATGATGCTGATGATGCCGGGAATGGAGGTGCGGGGCTTGCCGAGGGGTGCGTCAAAGAGTGGCGGCGGCGTAGAGGGTGGAGAGGTGAAGGTGGCGGAGAAGACGGCGTTTGATTTGAAGCTTGAGGGTTTCGATGCGGCGGGGAAGATCAAGGTGATTAAGGAGGTGAGGACCTTCACGAGTTTGGGGTTGAAGGAAGCTAAGGATTTGGTGGAGAAGGTGCCTGCGGTGTTGAAGACAGGAGTCACGAAAGAAGAGGCTGAGAGTATCATTGCCAAGATGAAGGCGGTTGGCGCAAAGGTTTCCATGGAATAA 594 0.5505 MKFYSRFKHVSHLLQTLTPHQNPPLASARISILPNAQPLPRPSYARGYCVASQSHTSEKVSAIVDEVMGLTLLEVMDLVEVMREKRGVNELPIMMLMMPGMEVRGLPRGASKSGGGVEGGEVKVAEKTAFDLKLEGFDAAGKIKVIKEVRTFTSLGLKEAKDLVEKVPAVLKTGVTKEEAESIIAKMKAVGAKVSME 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01798 197 Gene3D - 124 196 IPR014719 -
Vian1g01798 197 FunFam 50S ribosomal protein L7/L12 126 197 - -
Vian1g01798 197 Hamap 50S ribosomal protein L7/L12 [rplL]. 57 197 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vian1g01798 197 Pfam Ribosomal protein L7/L12 C-terminal domain 130 196 IPR013823 GO:0003735|GO:0006412
Vian1g01798 197 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 59 103 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vian1g01798 197 PANTHER 39S RIBOSOMAL PROTEIN L12 40 197 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vian1g01798 197 Pfam Ribosomal protein L7/L12 dimerisation domain 59 98 IPR008932 GO:0003735|GO:0005840|GO:0006412
Vian1g01798 197 CDD Ribosomal_L7_L12 58 196 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vian1g01798 197 SUPERFAMILY ClpS-like 126 196 IPR014719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01798 Vian-Chr1 21180730 21181323 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01798 K02935 - gmx:100775592 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01798 1 21180730 21181323 Vian1g01798 1 21180730 21181323 ECH